CI01000080_04185680_04192219 (RGCC)


Basic Information

Item Value
gene id CI01000080_04185680_04192219
gene name RGCC
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 4185146 ~ 4192219 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000080_04185680_04192219.mRNA
ATGAAGTCTCCAAAGATAAAGTCACAGAGCAAATCATTCCTTGAGGATGATGACGATCTAAACGCCGTATTGTGTGAATTCGACGCTGTCATTGAGGATTTCACGTCTCCCGTGGAAAAGAGACACTTCAGATATGATGAACACTTGAAAACCATGAAGAGACGGAGCAGCGCGAGCGTCAGCGACAGCGGCATCAGCGACTCTGAGAGTGCAGAGTCCTTGAACAGAAACAGTTTCAGCTTCAGTGATGAGAAGCTCAACTCTCCCAGCGTCTTCTCCCCTTCATCAAATAGTCCCCTGGTCACATCTCCTAAACCTAAACTTGGAGACACTAAAGAGCTAGAGGACTTCATCGCTGACCTTGACAGAACATTAGCGACTATTGAAAGACTTGCTAATTTGGATAAAGAGCTCATTAAGAGGGTGTTCATAAAAAGAGGACTTGCGTACACACCAAGAATAACCTTGACACCCAAGGACCTGGAAATGTACTAAGTTTGTTCTCTGCTTGCCTGTTGTTTTTCCTCCAGGCATGTGAGTAAGAGACGGGATGACTGGAGCCCAACACATTGTAGCTCCGCCGGGGGACGACAGCCAGATCGCACCTGACAAACCTGAACTACTGTGAAGACGGAGGAGACATGGTCCTGGTTTTTACATGCTGAAGTTCACGAAGACTTTTTTTGTATTCTTACGCCTATACAAACAAACCCAAACAAATGCATAAGAAATACACATTTGACAGTAATGGCTGTGCTCTCTGAAAAACTTGAGCTGTAAGATTATTTAAATAGCTTTTTATAGAAATATATTTGTAATTTTATAGAGTTGGTTATTGTAAATTTATCTGTAATACTATTTTGTGAATTTATATTTTTGTATTTCATGTAAATATTGTTTCAGACTCGCCTTGCTATATGAAGCCTTTCCTGTTTCACATGAGGATAAACTCCATTCTTAATTCATTAGAAAAACTGGAAAAGCAATATAACACGTATTTAATACAACTAATGTCTTCAAGAGATTAAA

Function

symbol description
rgcc Predicted to act upstream of or within regulation of cell cycle. Is expressed in several structures, including anterior neural keel; nervous system; neural plate; neural tube; and presumptive diencephalon. Orthologous to human RGCC (regulator of cell cycle).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000080_04185680_04192219.mRNA True 1029 mRNA 0.40 5 4185146 4192219

Neighbor

gene id symbol gene type direction distance location
CI01000080_04006295_04009794 NA coding downstream 175352 4006181 ~ 4009794 (-)
CI01000080_03972165_03981008 NA coding downstream 202381 3972131 ~ 3982765 (-)
CI01000080_03925953_03961599 DGKH coding downstream 223329 3925530 ~ 3961817 (-)
CI01000080_03882251_03905283 AKAP11 coding downstream 279863 3882215 ~ 3905283 (-)
CI01000080_03871122_03871424 NA coding downstream 313261 3870817 ~ 3871885 (-)
CI01000080_04196209_04198578 NA coding upstream 2843 4195062 ~ 4198578 (-)
CI01000080_04199562_04201445 KBTBD7 coding upstream 7048 4199267 ~ 4201597 (-)
CI01000080_04226079_04237658 SLAIN1A coding upstream 33809 4226028 ~ 4237658 (-)
CI01000080_04239679_04243440 NA coding upstream 47166 4239385 ~ 4243440 (-)
CI01000080_04380060_04382833 CLN5 coding upstream 187808 4380027 ~ 4382833 (-)
G292954 NA non-coding downstream 7292 4177509 ~ 4177854 (-)
G292951 NA non-coding downstream 14296 4170589 ~ 4170850 (-)
G292949 NA non-coding downstream 17718 4166868 ~ 4167428 (-)
G292947 NA non-coding downstream 20143 4164781 ~ 4165003 (-)
G292906 NA non-coding downstream 43020 4141614 ~ 4142126 (-)
G292967 NA non-coding upstream 2365 4194584 ~ 4194873 (-)
G292968 NA non-coding upstream 23944 4216163 ~ 4216576 (-)
G292969 NA non-coding upstream 24598 4216817 ~ 4217152 (-)
G292975 NA non-coding upstream 25366 4217585 ~ 4218008 (-)
G293021 NA non-coding upstream 126834 4319053 ~ 4321673 (-)
G292714 NA other downstream 457136 3715481 ~ 3728010 (-)
CI01000080_03207204_03212602 NA other downstream 966743 3207204 ~ 3212913 (-)
G292387 NA other downstream 1441900 2733587 ~ 2743246 (-)
G292349 NA other downstream 1659737 2518078 ~ 2525409 (-)
G292089 NA other downstream 2513226 1635762 ~ 1693395 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014587 NA coding CM030128.1 CM030128.1 18668806 ~ 18674332 (+)