CI01000080_04380060_04382833 (CLN5)


Basic Information

Item Value
gene id CI01000080_04380060_04382833
gene name CLN5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 4380027 ~ 4382833 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000080_04380060_04382833.mRNA
ATGAAGTTTTCCGTTCACTTCATTTACGCGGTGCTTCACTGTTGGATTGTGGGGTTGGTCGTTTCTAGGGTCAGTGGAAAGCAGGTCTGGCCAGTGCCTTACAAGCGACTCGACAGCCGTCCAGATGTAGATCCCTACTGCCAGGCTTTATACCCATTCTGCCCCACTGGAGATCCATATGGTCGGATACCTGTCATGGAATACTACGACATCATCTCAGTGTTCAGACTTCAGACTCCTGTGTGGGAGTTCAAATATGGTGACATCTTGGGAAAGTTTCATATAATGCATGATGCCATTGGCTTTGGAAGCGCAAAAACCGGGAGAAACTTCACGATGGAGTGGTACGAGCTGTTTCAGCTTGGGAATTGCACTTTTCCTCATGAAAGAGAGGGTGTGAGTGCCCCATTCTGGTGTAACCAGGGAGCCGCCTGCTTTTATGAGGGCATAGATGACATGCACTGGAAGCAGAATGGGACTTTGGAGAAAATAGGAGAGATATCAGGTGAGATGTTTAATGAGTTGGCTCTGTGGGTTCAGGAGGACAATGAAACGGGTGTGTATTACGAGACTTGGACGGTAATGTCAGAACCTGGTGCCAATGCCACAACGTGGTTCGAGTCCTACGACTGTTCTCAGTTTGTGCACCGTACATATAAGAAATTAATGGAGCTGGGTGCGCAACTGTTGAGCCAAACTCCAACCAATTACACAAAGATCTATTTGTACAGCGGAGAGCCGCTCTATTTGGGAGATGACTCCATCTTTCAACAGTCTTCTACGAAAGATCTCGCCACAGACATCAAGAAGTTTTATCACTCGTTTCGTTCTCACCAGTCAGTGATAGAAATGATTATGAGCCTGTTGGAGGCTTATGACAAGATGGTCCTAGAGAAGACCTTCTATTTCTACTACAACTCTGAATATTGGAAGCTGCCAATGAAATATCCTTACTTACAAATAACCTATGAGGAGATTCCTTTTCCATAATGACCGGATTTTTTTTGCTCGAACAATATTAAA

Function

symbol description
cln5 Predicted to enable hydrolase activity, acting on glycosyl bonds. Predicted to be involved in lysosome organization. Predicted to be located in lysosome. Predicted to be active in lysosomal membrane. Human ortholog(s) of this gene implicated in neuronal ceroid lipofuscinosis 5. Orthologous to human CLN5 (CLN5 intracellular trafficking protein).

GO:

id name namespace
GO:0005764 lysosome cellular_component

KEGG:

id description
K12390 CLN5; ceroid-lipofuscinosis neuronal protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000080_04380060_04382833.mRNA True 1023 mRNA 0.45 4 4380027 4382833

Neighbor

gene id symbol gene type direction distance location
CI01000080_04239679_04243440 NA coding downstream 136587 4239385 ~ 4243440 (-)
CI01000080_04226079_04237658 SLAIN1A coding downstream 142369 4226028 ~ 4237658 (-)
CI01000080_04199562_04201445 KBTBD7 coding downstream 178430 4199267 ~ 4201597 (-)
CI01000080_04196209_04198578 NA coding downstream 181449 4195062 ~ 4198578 (-)
CI01000080_04185680_04192219 RGCC coding downstream 187808 4185146 ~ 4192219 (-)
CI01000080_04488197_04502798 NA coding upstream 104998 4487831 ~ 4504534 (-)
CI01000080_04517413_04566482 EPHA3 coding upstream 134072 4516905 ~ 4566695 (-)
CI01000080_04578958_04583985 NA coding upstream 195655 4578488 ~ 4584364 (-)
CI01000080_04611752_04614340 EPHA3 coding upstream 227726 4610559 ~ 4614340 (-)
CI01000080_04778886_04784529 NA coding upstream 395778 4778611 ~ 4784529 (-)
G293021 NA non-coding downstream 58354 4319053 ~ 4321673 (-)
G292975 NA non-coding downstream 162019 4217585 ~ 4218008 (-)
G292969 NA non-coding downstream 162875 4216817 ~ 4217152 (-)
G292968 NA non-coding downstream 163451 4216163 ~ 4216576 (-)
G292967 NA non-coding downstream 185154 4194584 ~ 4194873 (-)
G293056 NA non-coding upstream 49716 4432549 ~ 4432819 (-)
G293085 NA non-coding upstream 118323 4501156 ~ 4501434 (-)
G293093 NA non-coding upstream 254268 4637101 ~ 4637336 (-)
G293104 NA non-coding upstream 273920 4656753 ~ 4657005 (-)
G293209 NA non-coding upstream 325169 4708002 ~ 4708225 (-)
G292714 NA other downstream 652017 3715481 ~ 3728010 (-)
CI01000080_03207204_03212602 NA other downstream 1161624 3207204 ~ 3212913 (-)
G292387 NA other downstream 1636781 2733587 ~ 2743246 (-)
G292349 NA other downstream 1854618 2518078 ~ 2525409 (-)
G292089 NA other downstream 2708107 1635762 ~ 1693395 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037029 cln5 coding NC_007120.7 CM002893.2 16854121 ~ 16859169 (+)