CI01000080_04517413_04566482 (EPHA3)


Basic Information

Item Value
gene id CI01000080_04517413_04566482
gene name EPHA3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 4516905 ~ 4566695 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000080_04517413_04566482.mRNA
AGCCTCATTTTGTGCAGTCCCAAATGGAGGGCCTCAGAGGAGAAACAGGTTAAGATAAACTTGCATTCTCATGCATCACAGGTACTCTCCATGCCTTCTTCTGCTCACACTATGCATAAGAAAACCTCTCAGGAAAAACAACAACAGGCATAGGTGTGCTGAAGTGGTGGGAATGTCGACTGTGAGATAATATACATAATAAACATCACTGATATGTTGGAAGTGGATGCACACATCCCTCCCAAGAAAGCCTTATTAAATGCCTGCCGGCCTGGCTTTTATAAGGCCTCCTCCGGGAACGTCAAGTGCTCCAAGTGTCCTCCGCACAGCTACACGCACCAGGAGGGCTCCGTCCACTGCGGCTGCGAGAAAAACTACTTCCGTGCGGAAGAAGATCCCGCCTCTATGGCCTGCTCCCGACCCCCATCTGCCCCACGCAATGTGATCTCTGCCATTAATGAGACTTCAGTGATTCTAGACTGGAACTGGCCGGCCGACAGTGGAGGCAGGAAGGACGTGACATTTAATGTAGTCTGTAAGCGATGTTGGCCGGGTCCCAGACAATGCGAACCCTGCAGAGGGGCTGTGCGCTTCCTGCCCCGTGCCTCTGGCCTCACTAACACGACAGTAACCATGGCAGACCTCCTGGCACACACCAACTACACCTTTGAGATTGAGGCCCAAAACGGAGTGTCCTCCCAGGCCCCCACGATCCGCCAGTATGCTGCTGTCACCATCACTACCAACCAAGCAGCCCTGTGGGGCTCAGGCCACTGTCAGTTCAGTGCTGTCTGTGGAGTGATAGTTCAGTTTTTTAGTTCGGGCTGTTTCAGAAACCAAACCCTGGAAGATCGTGACCCCTCTCCGTTCTTCTCTACTCTTGCTCTTACACAAGTAATCCAGCTTCCTTTACTGTCCTATAAAACACAGCCAGAACAAGGAAGATGGATGTGTGAACGGCCAATCCAAAATACGTTGTTGCGGTTGCTTCTATTTGGCGTGTGGAGTTTTTTGGGGGGAAAGGGCAGGGAGAAAGAAAAGGAGGGTCTAGCTCAGGCATGGGCATCTCCATCTGCAGTGACTGTCATCAGGAAGGACCGAACATCAAGGAACAGCATCTCACTGTCTTGGATGGAGCCAGAGAGACCCAATGGGATCATTTTGGACTACGAGGTCAAATACTATGAGAAGACCCTTCAGCCACCTAAACAGAATCATCCAACTGTTCACTGTGACGTTCTTTACTATGAAACTCTATTGGAACTCTATAAACCAGTGGCGAGGCCAGAAATTTTAAAGGGATCTGAGGGTGTGAAAGAAAGCCCTAGAACAGTCTCCAATGGCAACCATCCAGAATTCTTCCCGCAGCAAAAACATTCCGTAGCTTTGTGGAGGACCTTTGTGATGTGCCTTTCAGTGAGATCAGTGAGGCCCAAATCTCTGCCTGTGGAAATGCTTTCGCTTGGCCCTAATCCCCTTATTTGCAAGCAAAAGGCAGCTCATCGTGGGCTATTTTCACCGTCTGGCACAGGCATAGCTGGAGTCGCCCAAATCCTACACAACTGGTGCTGCCATGTGGAAAAGCCAGGGACACCCTCGCGCACTTGTCGAAAAGTAACAATTGCACGCCTTGTCAAACCCCAGAGCTGGGAGGTGGCTGATGCGGACCTAGGACATATGCAGGAACAAGAAACCAGCTACACCATCCTGAGGTCGAAGGGCACAAATGTTACACTGAACGGACTAAAACCCGACACCACCTACCTGCTGCAGATCAGAGCACGCACCGCTGCCGGTTACGGTGGTAGCAGTCGCAAGTTTGAGTTTGAGACCAGTCCAGACTATATGAGTATGAAAATGTGTGGCCCTTCATGTCTGTTGCCTATATATAGTTGTAGACGATTCACTTGGCAGAAGCTTTGTTATTTTTCCTGCCCCTGCTTTGCCGAATGTAACGGGCACCCTGAGAGTCAAGTGTCATGTCATGCAGAGGGGCTGATTTTGGCAGACTGCACCATTGAAATGAGACTGCCTGGCATCAAGACCTATGTGGACCCACATACTTATGAAGACCCGAGTCAAGCCGTGCACGAATTCGCCAAGGAATTGGAAGCGTCTTGTATTGCCATTGACAAAGTCGTTGGGGCAGGTGGTGTAAATGAGAATCATTTAGCACCACAGCTGGAGGTGTGTGGCTTTGATATGGGGAAAGGGTCCCTCCCAGTGCTCATCCTCACTGCCTCAATGCCTTTAATAGACTGCCTGCTGCCGGAGCAGAGGAGCATGGGGGAGTTTGGAGAGGTGTGCAGTGGCCGACTGAAGCTACCGTCTAAGAAGGAGATCTGTGTGGCCATCAAGACTCTCAAAGCCGGATACACAGAGAAACAGAGGCGGGACTTCCTCAGTGAAGCGAGCATCATGGGACAGTTTGATCACCCCAACATCATCAGGTTGGAGGGTGTAGTCACACGAAGTAAACCCGTGATGATAGTGACCGAGTACATGGAGAACGGCTCCTTGGATGGCTTCCTGCGAAAACACGACGCCCAGTTCACAGTGATTCAGCTGGTGGGCATGCTACGTGGCATTGCATCTGGTATGAAGTATCTGTCGGATATGGGTTACGTGCACAGAGACTTGGCCGCTCGGAACATCCTGGTCAACAGCAACCTAGTGTGTAAAGTGTCAGACTTCGGCTTGTCCAGAGTTCTGGAGGATGACCCAGAAGCTGCCTACACAACAAGAGGTGGCAAGATTCCAATCCGATGGACCGCACCAGAGGCCATCGCCTATCGTAAGTTTACCTCGGCCAGTGACGTATGGAGCTATGGGATTGTGCTGTGGGAGGTCATGTCTTACGGAGAAAGGCCTTATTGGGAGATGTCCAATCAGGACGTGATAAAAGCAGTGGATGAGGGCTATCGTCTTCCCCCACCCATGGAATGCCCTGCCACCCTTTACCAGCTGATGTTGGACTGCTGGCAGAAGGACCGAAACAACCGGCCAAAGTTTGAGCAGATTGTCAGCATCTTGGACAAGCTCATCCGCAACCCCAGCAGTCTCAAAATCACGGCCAGCACTGCATCCAGGTCTAGAATAATCACACACTCCTACAGCTGGTCACATAGAGTTATGATTGAGATGTACATAAGACCTCAGTATTTTCTACTGATTATTTTACTAGACAAAATCAGTTTATTTTTGGAGCCAGTTTGCAGAAACAGTCCTCAGACAGGCAGTGTTTGTGATAAACATTTGCTGACATCCTGTTTCTCCAGTATCCAGAATGCAGTACTAATGTTTTTCAAAGTATTATACACAACATGGACAAGAGTAGGTGCACAATCTCAGAGCCTCCTCACAGCAAGAGATGCATTTTTGTCCGTGACGAAGCTACCCAGATGTTTCTCCATGAGGAACATCCTCCCTCCTTTCCTATCCCAAGAGAACTTTAAAAACATGATACTAAGCAGCCTCGGTTATTTAGAGGTCACTACACCAGAGGGGAAAGAGGAAAGCAAAAGAAAAGAGAGGGAACCAGCAGAGAGCCCAAGTGTTTACCTCTCTTCTTCCTCACCCTCTGGCCTGTTGTGCTCCTGTCGAGTGACGGCTCAGATCTCTGACGCCAGCAGCTGATGCGGTCAAATGCAGCGTGTACACACCAGAGTTTATGCTATCACTTCTATACCCAACAACAAGGATTTTTCTCCTCGTCAACTGCTTTTTCACCTGAGTTTTGATAAGAATGTAGCTACAACACACAACAGAGGACTCTCTGTTTGTTATCACTATTTTGCTTCAGAGATTCAAGTCAATGTTTTCACTAGTATAGATCATATTATCAAATCTCTGCTTTCTTCCACCATGTTGGCCATTATGATTAAGATGTACAAATTATTTATAATATTAATGCAGTAGGCTTACATGCACATATAATTTAAGTAGTCCTGTCAATCCATTAATATATCAGCTGTTTTAATATGTCTCCACAGTTAACATGTTAGTGAATGTGTCAGTTCCTTTTTAATGAAAGAAAACTATAGGCCCACTGATACAGTAATTATTAGGTTCTGCAATTTGTGTGGGTGACACCACACAAGCATAAATTTATGCTATAAATGTGAAACAGTAGTTCAATAATAAA

Function

symbol description
epha3 Predicted to enable transmembrane-ephrin receptor activity. Acts upstream of or within mesoderm migration involved in gastrulation and somitogenesis. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Is expressed in optic cup. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human EPHA3 (EPH receptor A3).

GO: NA

KEGG:

id description
K05104 EPHA3, HEK, TYRO4; Eph receptor A3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000080_04517413_04566482.mRNA True 4144 mRNA 0.48 23 4516905 4566695

Neighbor

gene id symbol gene type direction distance location
CI01000080_04488197_04502798 NA coding downstream 12371 4487831 ~ 4504534 (-)
CI01000080_04380060_04382833 CLN5 coding downstream 134072 4380027 ~ 4382833 (-)
CI01000080_04239679_04243440 NA coding downstream 273465 4239385 ~ 4243440 (-)
CI01000080_04226079_04237658 SLAIN1A coding downstream 279247 4226028 ~ 4237658 (-)
CI01000080_04199562_04201445 KBTBD7 coding downstream 315308 4199267 ~ 4201597 (-)
CI01000080_04578958_04583985 NA coding upstream 11793 4578488 ~ 4584364 (-)
CI01000080_04611752_04614340 EPHA3 coding upstream 43864 4610559 ~ 4614340 (-)
CI01000080_04778886_04784529 NA coding upstream 211916 4778611 ~ 4784529 (-)
CI01000080_04911814_04914963 NA coding upstream 345047 4911742 ~ 4914963 (-)
CI01000080_05119672_05121617 NA coding upstream 552361 5119056 ~ 5121754 (-)
G293085 NA non-coding downstream 15471 4501156 ~ 4501434 (-)
G293056 NA non-coding downstream 84086 4432549 ~ 4432819 (-)
G293021 NA non-coding downstream 195232 4319053 ~ 4321673 (-)
G292975 NA non-coding downstream 298897 4217585 ~ 4218008 (-)
G292969 NA non-coding downstream 299753 4216817 ~ 4217152 (-)
G293093 NA non-coding upstream 70406 4637101 ~ 4637336 (-)
G293104 NA non-coding upstream 90058 4656753 ~ 4657005 (-)
G293209 NA non-coding upstream 141307 4708002 ~ 4708225 (-)
G293242 NA non-coding upstream 145292 4711987 ~ 4712189 (-)
G293255 NA non-coding upstream 172154 4738849 ~ 4739286 (-)
G292714 NA other downstream 788895 3715481 ~ 3728010 (-)
CI01000080_03207204_03212602 NA other downstream 1298502 3207204 ~ 3212913 (-)
G292387 NA other downstream 1773659 2733587 ~ 2743246 (-)
G292349 NA other downstream 1991496 2518078 ~ 2525409 (-)
G292089 NA other downstream 2844985 1635762 ~ 1693395 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037027 epha3 coding NC_007120.7 CM002893.2 16449398 ~ 16618607 (+)
bowfin (Amia calva) AMCG00014257 epha3,LOC107549902,LOC107676997 coding CM030128.1 CM030128.1 6814181 ~ 6860542 (-)