XLOC_010732


Basic Information

Item Value
gene id XLOC_010732
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 26371697 ~ 26379456 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021806
GTTGTTATTTACAACCAGCATCGTTTTAACGTCTTTTAGATTTGTGAAACGGCCTCAGTCGCCGCGTTAGGTCGTTTATAACTAGTATTTAACCTAATACAATGAACGGCGTTGGTGTCATTTTAGGGGTGGAAGTTCAAGGCGTTTGTTTGAAGATGGTGTTCACTGAGGGCTGTCACAGTCCACTGGATAATAACCAGAGGTTCTAGACCGGTGGGGTTTGAACCTAACGTTACATCCAAATGCAGCAAATGAACTGACGTTTGTCCCCCGgttgTTCAAAAGATGAAACCCAACttgttaaagaaaacaaaactatccAGTCAAAAGAGCAAAGACAAACAGTTGCAAAATGGTGATAAGGAGCCCCTTCCATCAGATGTTGATGCCATCTGTGTTGGCACAGATGCAACTGAAACATCTAATGATATGCTGAACTGTGTAATGGACTGTTGTCCCAAAGTCACACAGATGAGTCCAGAGCAAGGAGAGTTGGAAGCTTTGGGAGTCCTAATGCTATCAGAGCAACACCAGCAGCACAATGTGAACCTGCAGCCTTGTCCTCCTGCGCTCAGAACATTTGTTCCAAAGACAGAGCCAGATCACTTTCCCTTAAACCAAACTAGTTTTCAGGTCAAAACTGAGCCTGGAATTTATGAAGTACTTCAGAGAGAGTCTACGTTGACTGTGGAAGAGAAAAAGGAGAGATATAAGGAAGTGAAGCTTGAGATGCCAGAGGAAAACCTGCTGTGTAATTCTGACCTGGAGGAAACCATggCTTCTTCCTCCCTGATTTTTCCTTGCCCCCATTGCTCTGTGACTTTTACTGACTTTACATACTTGGACAAGCACTTCAAATGGTGCCATCGAAGTGAATACCTGTCATGGGTGAAAAACCACAAAGTCTACAACTGCTCCAAAATAACCTCCGGGATGCTCAGCTGCACTTCATGCCACTATCGTTTCTTCTCTCAAAGCCAGCTGGAGACCCACGTGCGCAAGGCTCACCTTCCGACACCCAAACCCACCCGAAAACGCTTCACCTGTCCGCAGTGTGATCGTAGCTTTGATTACATTGGAAACTTACAAAACCATTGCCGCCGATGCCACAGCTTATCTACGGTGTGCAAAGATGGATATATTAGCTGTGCTGCATGCGGTAAAAGCTTTGCAGGAGTCTGGGGCCTTGGACCACATCGCTGTCATGATGATGAGAAGATACTTGATACAAGTGAACCCCTTTGCACAGACCGTGGGTATTTGTGCCAAGATTGCGGCAAGAACTTTTCTACACTCCAAAGTCTAAAGACACACAAACGCATACACACCGGCGAGAAACCATGCATCTGTGGAGATTGCGGCCATAGCTTTTATGATATGGGGAGTCTGCGCCAACACAGAGTCATCCATACAGGAATCCGGCCTTTCAAGTGTCCTGAATGTAATAAAGAGTTTGCTAGAATGGGCCACCTCAGATGCCATCTGAGAACCCACACGGGAGAAAGACCATACCCATGTCCTCAATGCGGCATGAGATTCAGCCACCGCTCAACACTTCGCATCCACCAACAAGTTCACTCCAAGGAAAAAGCATTTCCATGCGCTATCTGTGGCAAAGCGTTTTCTGCTTTGAGGTATGTGAAGGTCCACCAAAGAGCGCACAACTCTGAGAGAATTCTGGAATGCCGAGAGTGTACAAAGACTTTTACACGAGCGGATGTGCTTAAGAAACACCTGCGCATTCACTCTGGCGAACGGCCGTATTTTTGCAACATCTGCAGCAAGCGTTTTGTACGCATCCAGCACCTGAAAAACCACATGCGCACTCATACTGGTGAGAAACCGTATCGCTGTGAGCAGTGCGGCTCCAGCTATGCCCAGTCTGGAGATTTGACTAAACACATGAGGAAGCACACAGGAGAAAAACCCTACGCCTGTTCAGACTGTGAGCGTCGCTTCAGCAGCTCAGGTGACCTGAGCAAGCACAGGCGCAGTCACACGGGCCACAGACCCTATAAGTGTTTGGAGTGCGGGAAGAGTTTTATATTGTCCCAGCACCTGAAGTTACACAAACGAACACACACAGGCGAGAGGCCGTACAGCTGCACACAGTGTCTTCGCACATTTACACGCTCACACCATCTCTCTCAACACATGGAGAAGCACACATGAGGACAGATGACTGCACGCCTGTCTAATATTTCATGTAGGAAAATGAATCGGGAGATTAATGATGAATTGGGAAATCGGTTTTCTTTAAGGAATGCAATCCAGACAGATTTCTTTCTTCCGTGGGATATATTTAAGGGTTAAGCATATAGTAACGTACCCATtgttaggcctgtcatgatatccattttttgttataatatattacactaaaatatattgcgataaacaatatattgtcattTTATGACACTTCTTGTATAATatcagaatgacaatataataagaaacatttaagaacattttaatttaattaagaatTAAGAACATTTAATTCAATTATAGTAATTtcaatcataataaataataaatgttaagaaaAAATTGCAAGGTAAAATGTAACAGACCGCAATATTGGCTACCAGAACTATTTTCatttgtcagacacccacatgaaaatataatacagtaatttacagtaaatactatggtgttttttaaccatacttaCACCTCTAAAAGAGATAAAGATGTTGCAAAATCAGATAAATTGTTGCCAGAattggttttaatttataagtgatatatattgcattatcaaaaattattgaggtcatgtccaagTGTTTTGCGGTAAATTGATACATTGATTATTGTGTCAGGCCTACCCATTCTTTCACTGATCAAATAAAATTAATGCCGTTTACGTTTTTTTGTTCAACAAGGAACAAGCAACTGACAAAAGCAGTGCTTTAAACTTGATCTGTCTTTTTAAAAGGAATCGCTAgcataataaattgtaaataaaataaagttttatttagcCATTTAAAGACACTGTTCATAAGAATTGACAGCGTGCCCTTTACTTTTTCGATAATAGACTTATAATAGATTGCTGTAGCATAGTAACAATAATCtacaaattaaaattaatctATAGGCGCAATAATGGAAGTATTCTAGAACTACATTTATAAACTGATGTTAAAATTTAAACTTGCTCATCACTCGGTGCTCTCGGAAAAATTACGTTTCAGCAAATTTTTCAAACTGCTGTAACTGTGTTAGGGTTCCTTTTGTGTTGATATGTAAGTGACGTCATTTTGCTCTgttcatattttaacattttcagaAGTCTGGCTCACAGCTAAAAATAAATTCTGCATTTAGAACTTTAATGCTTTATGGAGAacactgaaaactacatttgtgtgttttcagTTCTGCACTAGGCGTGGGCGGGTATAAGATTCTAACGATTTGATAaccatggataaaaatattacagtttcacgattactgctgtaaaacaggttctttttaaatgtctgggtcaaaaacaaatcttttttctgCTTTGATCACAATGGCTGTGCCTGAAATCACAGACTTCCATActatagtatgttaaaaacagtatgctAGCCAAGTAGGATGTGTAAatacagtatgcaagaagtacccagatgacctaatacttctggtgagattctgaagtgcgcatctgatggatgctacgctatcccatgatgcactgcgAGAGAaatcatgaatggaagtgaagcgggTATGTcacatgatgatgacaaaatggcatcTGTTGTACGTCCGACTCCGAGGTACATTCActcgcattcatactgtatagaacatacttttctatcaGTCAAGTAGTAAATACAAATggagtacctactgagtagtaggggATTTCGGACACAAACCgccagtatattttattttgagaaacatttgaaatattttgaagCAGAAAATATGTcaagctaaatatttaaaaaaattcaaatgaatcattgacttctgcagtcttcatcagtttcaaaaacaataatatatatatatattttaaatggcaTCTTTGGGTATCTTTTCTgatggagatactgctgtcctaaaaaacaaaccaaaaaataaataaatattaaaaatcttacacataccgtagaaacagtataacagaaaaagTTGTCTGTTTTTAAAAACCTTGAGTTTTCCAAACTGAGGTATACCTTAaaaatggttatcatcccatgcctatacTGCACTGTAATGGATTggttattttatagttatttgtgTGGTTGTTGATTTTACCAGGTTATTTTGCAGTTGTTTTTATGGTTGTTCATTTGTCTACCAATGCCAAAGTATTCTGAGGGTGatataactgaaaaaaaatgaaacattactGTAACTAGTTTAGAGGAAAATCTTTTTCGAAAGACTGATATTCATGACATAAAACGTATATAAACAATATGTTGTGTTAAGGTTTATGAGTTTACTGTTAACTTTAAAATGGATGAAATCAAATGACTTTTGCTCTGTTTTGAACTACAgtgttttgtcattgttttggctTGAATTGTGCGTTTAAGACTGTATTCTTATGTTAAATGAAACAGTAAATACAGTATGCTAACCAGAGAGAT
>TCONS_00021003
CCAGCATCGTTTTAACGTCTTTTAGATTTGTGAAACGGCCTCAGTCGCCGCGTTAGGTCGTTTATAACTAGTATTTAACCTAATACAATGAACGGCGTTGGTGTCATTTTAGGGGTGGAAGTTCAAGGCGTTTGTTTGAAGATGGTGTTCACTGAGGGCTGTCACAGTCCACTGGATAATAACCAGAGGTTCTAGACCGGTGGGGTTTGAACCTAACGTTACATCCAAATGCAGCAAATGAACTGACGTTTGTCCCCCGgttgTTCAAAAGATGAAACCCAACttgttaaagaaaacaaaactatccAGTCAAAAGAGCAAAGACAAACAGTTGCAAAATGGTGATAAGGAGCCCCTTCCATCAGATGTTGATGCCATCTGTGTTGGCACAGATGCAACTGAAACATCTAATGATATGCTGAACTGTGTAATGGACTGTTGTCCCAAAGTCACACAGATGAGTCCAGAGCAAGGAGAGTTGGAAGCTTTGGGAGTCCTAATGCTATCAGAGCAACACCAGCAGCACAATGTGAACCTGCAGCCTTGTCCTCCTGCGCTCAGAACATTTGTTCCAAAGACAGAGCCAGATCACTTTCCCTTAAACCAAACTAGTTTTCAGGTCAAAACTGAGCCTGGAATTTATGAAGTACTTCAGAGAGAGTCTACGTTGACTGTGGAAGAGAAAAAGGAGAGATATAAGGAAGTGAAGCTTGAGATGCCAGAGGAAAACCTGCTGTGTAATTCTGACCTGGAGGAAACCATgg

Function

GO:

id name namespace
GO:0034440 lipid oxidation biological_process
GO:0006635 fatty acid beta-oxidation biological_process
GO:0009056 catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0019395 fatty acid oxidation biological_process
GO:0016054 organic acid catabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000088497

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021806 False 4625 lncRNA 0.39 3 26371697 26379456
TCONS_00021003 True 764 processed_transcript 0.44 2 26378297 26379442

Neighbor

gene id symbol gene type direction distance location
XLOC_010731 erfl1 coding downstream 75220 26234059 ~ 26296477 (-)
XLOC_010730 arhgef1b coding downstream 139286 26140895 ~ 26232411 (-)
XLOC_010729 cd79a coding downstream 230929 26132951 ~ 26140768 (-)
XLOC_010728 lipeb coding downstream 239575 26081481 ~ 26132122 (-)
XLOC_010727 tmem145 coding downstream 297168 26027011 ~ 26074529 (-)
XLOC_010733 megf8 coding upstream 1005 26380461 ~ 26437668 (-)
XLOC_010734 CR391910.2 coding upstream 123637 26503093 ~ 26507404 (-)
XLOC_010735 l3mbtl1b coding upstream 131174 26510630 ~ 26528142 (-)
XLOC_010736 sgk2b coding upstream 150970 26530426 ~ 26537114 (-)
XLOC_010737 CR391910.3 coding upstream 221544 26601000 ~ 26601433 (-)
XLOC_010626 CR392024.2 misc downstream 5476522 20895112 ~ 20895175 (-)
XLOC_010711 BX571853.1 non-coding downstream 1029571 25339936 ~ 25342126 (-)
XLOC_010710 BX571853.2 non-coding downstream 1043050 25328531 ~ 25328647 (-)
XLOC_010708 NA non-coding downstream 1130629 25238250 ~ 25241068 (-)
XLOC_010704 NA non-coding downstream 1298805 25068504 ~ 25072892 (-)
XLOC_010703 BX539313.3 non-coding downstream 1359299 24999679 ~ 25012398 (-)
XLOC_010738 BX537166.2 non-coding upstream 240157 26619613 ~ 26642034 (-)
XLOC_010740 NA non-coding upstream 340424 26719880 ~ 26731928 (-)
XLOC_010741 BX511010.1 non-coding upstream 368297 26747753 ~ 26752205 (-)

Expression


Co-expression Network