G290197


Basic Information

Item Value
gene id G290197
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 272397 ~ 279847 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU329180
TGACAAATCACAGTTCAGGGAAATGTTTTCACAGGGCAATCACAGAGATAAAAGAAAAAAGTCATTCTTTTTGCATTTTAATATTGATGTGAAAAGTAAAATCTTAAGCTACATAAACTGCTCTGCTAACAGAATGGAATGCTAAATAAACAACCTTCAACAAACCTATAGCATTACACATTCGCGACCATTTGCTATGAAAATGATCAAATGGATCCAGTTACAAAATATATTGCTTTGAGATTCACAAAAGACTAATATAATTTCCTTGGCAATAAAACAAGAGCAGTTGTGGCAGATTCTCTATAATTTGGGACACTGCAGTCACAAAACTTGTCACAAATCCACCTTTGAAAGGTACACTATATGTAATGGAAGCACATACTGCACATTGGAAAAAAATTCACACAAAACACTTGCCCGTTGACTCTGAAAATGAGGAACAATATTTAATTTAGCATCCTATCCAGAACTGAATGTAGTGAATTGTTGCATGTGAATTCATTTAGTTGAATTTTCTGGATTTAAAATAAAAATTACTATAGAATATATAAAAAATAGTGCTACAATAAAAACTACCTCTATAATGAAATTGCAAAGCACAATATAGAATAAAAATGTAAAAAGAAACAATAACCGTCTAACCTAAATATATTGTAGTTAGACATTTACCAACTAAAATGTTATACTTATCATGCTTAATTTACCAATAAATCATAATTTCAAGAAACAAGTATTTTATAAAATCCCCAATACTTCCGAAAGAAATACAAAATATAGTTGTTTAAAATAATTTGCATTATTTTGCATATGAAAATGTAATAGAAAACTTCACATTATGTATATAATTGGTAGGTCCCTTAAGCAATGCATAGCAGGCTTGTACTAATACAAGAGCCACAAATCTGCTAAACAATTTTTCCCCTAACATAGCGTTTTGATCTGCGTGCAGGTGTCAAGTCAGTTATGGCTTTTCTTTTTCTCTGATGTCTCTGTTTCGCTGTTTGTTGTACTTCTGACTCCTCTGAATCTGATTCATCTTCTTTAGTGTTCTTTTTAGGTTCATGCATTTGCAGTCTCATTGATCTTCGTCTGCTTGAAGATGTACTTGAGCTACTCTGAAGAACATGCTTTTCAATGTCAAGACCTTTCTCATCCTCATCAGAGATATTTTCTTCACCTTCATCAGATTTTTCTGCAGATGTGAATATGTCTTTTGTGGCCTCCATGGCCACTCTGCTCTCCTCATCTGCTTTGTTTTCTTCTTGATCAGATGTTTCCTCTACTTCCAACGCTAAAGTGAAGCCCTCATTTGTACTGGACTCAAGCTTTTGCTTTTCTGTCTCCACATGTTGCTCTATCACTTCCTCCATTTCACCCGTCTCTTCTACTTTCTTGCTATTTTGCTCCATAACCTCTTCGTTATCCTCATCTGTCTGAGGTTTATTTACTTTTTTCTCTTTCTGCTCCTCTTGAGATTCACCTGCATCTGTCTTGGTGTCTTCATGTATATTACAATCTCCATCTGATTTAGTCCCTTTCTGGATTATCTGTTGTATTTCTCCACCCAAATGACTGCCCTCAAAAACTGCTGCAGGTACATCTGAGCTCAGCTCTACATTATCTGCTGTAAATGTCACTTCAACTGTCTCAGTTTGTTCCATAACTGCCTCCTTGACTTGCTCGCTATCGTCATCATGCTCTCGTTTGCGAAGACGTTTTGATTTTCTTGGAGCAGCTATTTCAACAGTCAGTCTTTTTCTCAGGGTTCTGCTTTCCACTGCTGTTTCCTCCAAACCAAAAGAACTTCCTTGCACTGCGTCTTCATTTTCTCTTTCCTGGAGTGGTTTCTCTTCCTCCTGTACACTTGAGACCTCATCCTCCTGTTCCTTAGGCACCTGTACATCTCTCTCAAAATTTTCCTCTTGAGTCTTGTTCTGCTTAGTGTTTTCTGGGCTGGCACTGTTACTTTCATTGATTTCAAACAGGACTTCATTTCCTTCCTCTACAGCATCATCTTTTGTCCCTGTTTCATCTGCCTTTCCTTCTATATTTTCCTGAATAATGCCTTCTCCTTCTTTTGTCTTCAAATTTTCAAATTCAGCAATGCTCTCCTCAGCATTTAATGCCTTATTCTCCTTCTCTATAGGGATATTTAAATCATCAGCTGATTCCTGTATTGCTGAGTCATTTTCATTTCCACATATGTTGTCCTTTGTTTCTTTTTCTGACTCCACCACTTGTCTGTGGAGGTGTTTTGATTTTCTTCTTGGTGTAGACTGGACTGTTACTGTTCGGTATCTGAGACTTCTTCTTGTAATGAAGGGTGCTTCTTGATCCGAGCTTTCTAAAACAACCTTCTCCTCCACAGCGGTTGTCTTAAGTTCATTCGTCGGAGTGGTTTCCCCTACATTTTCCTCTTTTGACAGTGCTGCTTCTTGTTGAGCAACATCCTCTTCTACTGAGCTTGTTCTTTCGTTCTCCTGAATATTCTCCTCATGTTTCTGGCCTGTGTTTTCCTGTGGAGGCTCCACTTTTTCTTCATCTTGAACTCCCCCCTCTACAATTTTTTGTGTTTTATCAATTTCCACCAGAATTTCATTTTCAGTTGTTTTAATTGAGCTCTTGGTCTCATCTTCTTCATCATCTGTAGATTTGTCAGGCAAAGCTTCATCCACCTTTCCCTTATCATTTGATATGTCTATCTCTTGCTCATATGAAGTAGTTTCCACCTTTCTACTCATGGAAACCATATCTCCATCTCCATCTTTATCAAGACTTTCCACATTGGCCTCTACTGTAATAATTGGTACACAGACATTCACAGTCTCAACTGTCGTTGATGGGCTTTCTTCATTTCCACTCATATCTGCTTCTTTCACTGGTTCCAACTCTGCTGTGTGGAGACGTGTAGATTTTCTTGTCTTCTGTGTAGATGTGACTGACTGTGCACTGATCCTCACACTTCTCCTTGTGATTCTTTCGCTTTTATTTTCATTGGTTTCAGAGCTTTCCATCTGCGCGACCTTCTCCTCTACTTGAATGGCAGTCTCCTCTATATTGCATGTTTGCTCCTTGCAAACCACTGAAACTTTATCCACCTCCATGGGTTTTTCTGCCTCGGCTGTTTCTTTCTCATTTTTAACCAATCGCTCATTTTCATGTTGCTCTAAATTGGCATCTTCTCTTCCCATCTCAGGAGCCGCATCATTCTCTGAGCTTGTTTCCTTGATCTCCATCCTGTTGATTTCTTCAAATCCTTTTTCTATTACATCCTCATCAGGTTCTCCTTCTACAAGTGGGATAATCTTCTCAGTATCCTCTTCCACCGGCTCCAACACAGCTAAATTTGCTTCCTTGTTCTCCATCTTGTTGACCTCTTGATCCATTTCTTCAACTGTCTTTTCTGTCATTGAAATTGATTCAGTTTTACTCTGGTTCACCACTGTGTGTCTTTCTTGATGTTCAACATCTGCTTCAGCTTCTTGTTTTTGTACACGTCTAGATTTCCTTCTTGGTGGTGACTGAACTTTTATTGTTCTATGTCTGAGACTTCTCTCTGTGCTGACTGGAACCTCCTCTTCTAAGATTTCCTGGATAGCTTCTGGTGCCTCCTGAGTAAGACCACTAATTTCTACATCACTGTCCATTTGTTTCTCTTTTAAAGCAATATCTTGATCATTTTCTGCCATTGTTGTTGCTTCTGGATGCTCTTTAGATGTTACAGCTTCTTCCATATCCTCATCTATGACTGCCTTATATTCCTCTACAATCTCCTTTACATCATTTTGTCCTTCCAAATCTTCTGTTGGTTTCTGCTTCTCAAATGTCATGTCTTGTTTATCATGTTTATTCTGTTCTTCAACTGTGTTTTCTTCCTCCATTTTGTTCTCTTCTTCCTCAGGGGTCTTTTCAGTATCTTCCTCTTTTTGTAGTTCTTCTTGCTGTTCCTCATGTTCTGATGTCTGTATACATTGTTGATATTCACTTTTATCTGGTTCATCCAGTTCCAGTTGTTCCTCTGTCTGGGAATGCGTTAGGACTTCTGGAGTGTCACACTCTCCTTCTCTATTTTGGGAAAGGTTGTTTAAATCTACAAGTATTACTGTGGCTTTTTGCAGCTGTATTATTGGAATACCATAATCTTTCTCTACCTCCTCATGAGGTTCTGCTTCTACAAATGTGACCTCCTCTAGTATCTGAGGTGCCTCCTTTTTATCATCTGTTTCTACACTTATCCGTTCAGAAGTCTCAGGTTCAACAGCTGTAGTTTCTTCAAGATTTGTCTTTGCTATTTCACCAATACTTTCCAAATTGGGCTCTAATGTAATTACTGGTATACACACGTTCACAGTCTCTTCTGTCTTTGCTGAGGTTTCTTCACATTTATTTCCACTCATATCTGCTGCTTTTACTTGTTCCAAATCTGCTTTGTGGAGACGTGTAGATTTTCTGGTCTTCTGTGTAGATTCTGTGACTGATTTTGCACTGAGCCTGAGACTTCTCCTTGTGATCCTTTCATTGTCACTTTGATTGGTTTCAGTGCTTTCCACCTGTGAGGTCTTCTCCTCTATTTGAATGGTGGTCCCCTCTATAATGTACATTTGCTTCTTGTTAACCACTGGGTCAATTTCCATGGGGTTTTCTGTCTCAGCTGTTTCTTTTTCATTTTTAATAAATGGTTCATTTTTCTGTTGCTCTAAATTGGCTTCTTCTCCCATCTCAGGTGCCTCCTCAACTATGTCCTTTGTCACAGCTAAATTTGTTTCCTTGTTCCCAGCTTCTTTTTCTACCACATCCTCTTCAGGTTCTGCTTCTACAAATTCATCCTCATTCTGATTGTTTTCATTTTTATTGCTTTCCACCAAGTTGCTCTGAGCTGGCATTGTGGCTAAATCTTCTATTGGCTTTTGCTCCTCAAATGTCATGTCTTGTTCATCGAGTTTGTTCTGCTCTTCAACTGTGATCTTTTCTTCCTCTATTTTTTCTTCCTCGGGGATCATTTCAGTGGCTTCCTGTGTTTGTATTTCTTCTTTTTGTTCTTCCTCTTCTGATAACAGGTTGCACAGTTCTTGTTCACTTTTATCTGGTTTATCAAGTTCCAGATGTTCCTCCATTTGGGAATGTTTTAAGATTTCTAGAGTCTCAACCTCCTCTGTATTTTGAGAAAGTTTGTTCAAATCTACAAGTACTACTGTGGCTTTTTGTAATGTTATTACTGGAGTACCATCCTCTATCCCTGTCTCCTCATCAGGTTCTGCTTCTTTTTCTTGATCATCTATTTCTACATCCATCATTAGCTCGGATTTCTCAGTATCAACAGCTGCAGTTTCTACAGTTTTTATATCAAGACTTTCAAAACTGGTCTCTGTTGTAATAATTGGTACACAGACATTCACAGTCTCTTCTGTTGATGCTAAAGTTTTTTCATCTTCATTTCTAATCATGTCTGGTTCTTCTAACTCAGCTAAATTTATTTCCTTTTTCTCCATTTTGTTGATTTCTTCAAATCCTTTTTCTGTTGCATCCTCATCAGGTTCTCCTTCTACAAGTGGGATAATCTTCTCAGTATCCTCTTCCACTGGCTCCAACTCAGCTAAATTTGCTTCCTTGTTCTCCATCTTGTTGACCTCTTGATCCATTTCTTCAACTCTCTCTTCTGTTGTTGAGACTGATTCAGTTTTACTCTTGGTCACCACTGCATGTCTTTCCTGATGTTTAACATCTGCTTCAGCTTCTTGTTTTTGTACACGTCTAGATTTCCTTCTCAGTGGAGACTGAACTCTTATTGTTCTACATCTAAGACTTCTTTCTGTCCTGACTGGTACCTCCTCTTCCTGGACATTTTTCTCCTGAGCAAGACTGCTCATCTCTATACCACTGTCTGTTTGTTCAGCTAAATTTGCTTCCTTGTTCTCCATCTTTTTGGTTTCTTTGACTTTTTCTGTTACATCCTCATCAGTTTCTGCTTCTACAAGTGGGATGTCCTCCTCAGTACCTTCTGTAATCTGTGGTGTTTTCTCTTTGTCATCTATTTCTGTAGCTTTCAGCAGTTCAGAACTTCCAGTTTCAATGACTATTGTTTCATCAACATTTGTGTTTGCCTTTTCACTCTCCTCTAGACCTACTTTTTCTGCAATAACTTCATCCCTTTCTGGGTTTTCATCAGTCCTGAATTTTGCCTCAACTTGTGGCTCAACACTTTCCATCTGCTGAATCACTACTTTGCTACGTGTAGATCTCCTAACAGGGGTGATCTTGATTGGTTTCAAAGTGCTTCTGAGACATCTAACTGTCGCCCCAGGGTCAACAGGTTGATCTCTAAGACTTGTTGATCTACTTGGGGTGTCAGTAGATCCTTTCTTTTGAGCTTGTTTGCCTTGTTTGGGAATCAACGTATCTGCCTCATATGAAGTTTGTGCATCCTCTTTAGCTTGTTCAGTGTCTGTTTTCTCCTCTGGTTTCTCAACTTGGCTTAGAAGAACAACCTCTGTGGTTTCAGGTTCTGGTTCACCCTCTTGTTCTTTGTATCCAGTTGATTGTTCTGGAGTTATTTTGGCATCAGCTGCTGCATTATATCCTTTTCTTGTGTCCAGTGTACCATCTTGTTCCTCCATTCTCATAATTTCTTCAGCTGCTTGTTTCTCAGTTGACACTGTGTGCTTCATTTCATCTTGTTCAGCAATATCTATCTCTCCGTGATTATCACTTGCCTCTTTAGGAGAAAGTTTGGCTTCACTCAGTGTCAACATCATAGAGCTATTCTCCACTGTCTCCTCATCCTCTTCAGGTGTTGTTTTCAATTTGTGTACCTCAGCAGACTCTACAGATGACTGTTGTGGTGCTTCTTCTTGGTCTATTTCTGAAATTTCAGGAACTACATCTACAGTTTCCCCAACCTGTGTGATTTCAGCATCCATAGTAGAATCCGTTTCCACTGTAAGCTTGTCTTTTTCTTTGTATTCCTCAACCTTAGACTCTTTTACTTTGTTAGCAAGAGTCCCTGATTGATCTGTCACCTCTTCTAAAGCTTCAGTATTGTTATATGTTTCAACAATCCCACTCAAAGCCTTTTCCTCTTCAGGTTCATCCAGCATTTGCTTTATTTCCTCCTTCTCTGCCTCACACACAGGTTTATGTTTCTCAACCTTTTTGTTCTTTTCTAAATTCTCAATTTGTTCCTCTTCAGTTCCTGTACTCATCTTGACAATTTCTATATCCACCACAGACTGAAGTTGGCTTTGGTCAATAGACCCTATAGTGGCTCTTTGTATTACTACAGTTTGCTCCTTATTAACCATTTCACATTCCTTTTTACTGCCTTCTTGGCTCTTTATTTCCCCAGCTGTGGTGAAGTGGGTGACTGGAGTCCCCTCTGATGTAGCTGTGACTTTGTCTTTTTCAATTTCCCATTCCTCCTCTTTCTGTGAACTTCTAACCTCTGAAATATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU329180 True 7451 TUCP 0.39 1 272397 279847

Neighbor

gene id symbol gene type direction distance location
CI01000080_00202124_00211154 HMGCR, HMGCRA coding downstream 61243 201941 ~ 211154 (-)
CI01000080_00118423_00142677 TTC37 coding downstream 129720 118423 ~ 142677 (-)
CI01000080_00103467_00104168 NA coding downstream 168209 103316 ~ 104188 (-)
CI01000080_00000621_00005854 MCTP1A, MCTP1 coding downstream 266543 547 ~ 5854 (-)
CI01000080_00292016_00307681 CCDC180 coding upstream 11899 290561 ~ 307681 (-)
CI01000080_00309567_00317169 CARD9 coding upstream 28199 308046 ~ 317669 (-)
CI01000080_00318151_00318865 NA coding upstream 38037 317884 ~ 318865 (-)
CI01000080_00319743_00328159 NA coding upstream 39896 319743 ~ 328159 (-)
CI01000080_00328119_00328700 NA coding upstream 48272 328119 ~ 328700 (-)
G290258 NA non-coding downstream 6949 264677 ~ 265448 (-)
G290252 NA non-coding downstream 20464 251668 ~ 251933 (-)
G290203 NA non-coding downstream 72778 198709 ~ 199619 (-)
G290205 NA non-coding downstream 106923 164571 ~ 165474 (-)
G290223 NA non-coding downstream 108003 164182 ~ 164394 (-)
G290360 NA non-coding upstream 220542 500389 ~ 501638 (-)
G290361 NA non-coding upstream 221957 501804 ~ 502067 (-)
G290362 NA non-coding upstream 222479 502326 ~ 503408 (-)
G290528 NA non-coding upstream 288706 568553 ~ 568756 (-)
G290261 NA other upstream 46946 327689 ~ 329517 (-)
G290314 NA other upstream 128038 407885 ~ 408144 (-)
G292089 NA other upstream 1355915 1635762 ~ 1693395 (-)
G292349 NA other upstream 2238231 2518078 ~ 2525409 (-)
G292387 NA other upstream 2453740 2733587 ~ 2743246 (-)

Expression


Co-expression Network