G290522


Basic Information

Item Value
gene id G290522
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 730000 ~ 735161 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU329540
TCATTTATAAAAATAAATATACGTTAAATATATTTCAATTTATTACACGAAATATTAACGGCTGTTTTTGTCGGCCAATCACGTCATGCCTCTTGTCTTTTCAAACTGCGGCGGGATCGCGCTCTTTTCACTCTGGCCTGGTTTGAGGGGAATCGCGATGCGTTGGACCCATCCGTAAATTACAGTAGATAATACTTGTTAAAATGCGTAGTGCTGAAAAAAAAAAATCTATCATGGAAATAGTTAGCTAACAAATAACTTACATTGTTAATTAGTTGGAAAGTGGAGACGTGTGCCGTTAGTGAAGTGTTAGCCAGGCAGAGCGCACGACGAGTTGTCCAGCACACCAGATCATTATAAACACCTAAAAGAGTGTATTATAAGTGAACAATTTAACGTGGAGCGTTTGCTTTGCTGCATCAGGTACGTTCACAGTGCCTGTGGTGTTTTTTGCGGTTGTTCTCATCACAATCTACGGTATGAATTTTCTTCAAGGACGTTGTTAGATTAACACTAAACTTATTTTCAAGAATTTGTTGATGTTGACAGAGAAGAAGGTTTGACCGATTTCACGTCAAGCACAGGAGCTCTACCACAAATGCTGGAGAGTCCCGTCAAATCCAGGTATTTTTTTTTTTTTTGTACAGTAAATGCATTTTTAATGTGAGGATATTTTATGTGACTTTTTTGGGCAATATAATTTGCAATCCATGTGCTGTCTGTCTATCTATCTTAGGCCTTGACTGTTGTCAGTTGGCCTTTAAATTTCTCATGATATACTAACTTGCAGCTTACTATTTTGTTGAAATCAATACTTTGTTCTTTGTATTTTTGATTTAATCAGCAGTGGAGATGAACATCGAAGGGGAGTCCCACAGTGGCTGAAATCTTTGAGTACTAATGCTGCTCGGATATGCTGGGTGTGCTCGATATTGAGTTTGGATAAATAACAGATGGAAAGACTGAGAAGTTGAAAGCTGAAGCTACCCTGGAAAGGAGTAATTTTCTCTTTTAGACGGGATGGAAGACCAAGCAGATGCTATATTAAAAAGTGCTACACAATGAAGGTTGTTCTTGCATATCTTCTGCCACCGTTGCCTGGAAGTCGATGCAATGTTAAATCTGAAATTTCATTCCTTCAATTTAATTTTGTACCGCTTGGAGCCAGTATTGCATCCCACTGCAGCAGTTTTGAGACCGCATCAAAGACCAGACCACAGCCAATCTACATTGGAAGTTTGAAGAGCACAACATGACAGTACATCATTGCGAGGATTGACAGAGTAACCATTCCTGTGAATGAGGGCCTGACGTGCTGTGGACAATATATTCTAGGTGTGAAACTTGTCCTGTCCACTACAGATTAGTTTGGTCTTCTCTTTCTAATATTGAAGCGCCACATTCTCTTCTTTTAAAACTGACATTCCTACTTCCCGTTTTGCCTCTTTTGAGGCCCAAATATATTCTTCATCAAACACAACTATAGCAGATGTAACGAAGTATTACTTCACAATTAGTACACAATTACAATTTTACAATATTTCCAAGTGATTGTCATTGCAAACAATTTCAAAATAGGTGCCTGAATGTTTGTCTGGTCTAAAATGTTTCTTTAAATGCATCTAAAAGTATCTGTCTGACTTGAGTTTGTTATGAGAAATGTCATCCACTAGTCTTGTTACTTGTAAGTGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU329540 True 1694 lncRNA 0.38 4 730000 735161

Neighbor

gene id symbol gene type direction distance location
CI01000080_00699809_00719764 SERINC5 coding downstream 10236 699625 ~ 719764 (-)
CI01000080_00670914_00678760 MTX3 coding downstream 51240 670749 ~ 678760 (-)
CI01000080_00614889_00638900 HOMER1, HOMER1B coding downstream 89316 613862 ~ 640684 (-)
CI01000080_00597523_00605227 LHFPL2B coding downstream 123548 597315 ~ 606452 (-)
CI01000080_00521848_00524367 OTP, OTPA, OTPB coding downstream 205610 521081 ~ 524390 (-)
CI01000080_00737755_00742405 CDK7 coding upstream 2350 737511 ~ 742647 (-)
CI01000080_00861858_00877122 LNPEP coding upstream 126584 861745 ~ 877638 (-)
CI01000080_00888517_00897726 ERAP2 coding upstream 152790 887951 ~ 897726 (-)
CI01000080_00905794_00918088 RGMB coding upstream 170594 905755 ~ 920428 (-)
CI01000080_01037946_01040084 NA coding upstream 302683 1037844 ~ 1040306 (-)
G290517 NA non-coding downstream 82485 646252 ~ 647515 (-)
G290535 NA non-coding downstream 118774 611018 ~ 611226 (-)
G290530 NA non-coding downstream 147866 581856 ~ 582134 (-)
G290529 NA non-coding downstream 148308 581459 ~ 581692 (-)
G290528 NA non-coding downstream 161244 568553 ~ 568756 (-)
G290606 NA non-coding upstream 63281 798442 ~ 798929 (-)
G290616 NA non-coding upstream 94287 829448 ~ 829648 (-)
G290632 NA non-coding upstream 119010 854171 ~ 854718 (-)
G290652 NA non-coding upstream 206700 941861 ~ 942067 (-)
G290902 NA non-coding upstream 284134 1019295 ~ 1019558 (-)
G290314 NA other downstream 321856 407885 ~ 408144 (-)
G290261 NA other downstream 400483 327689 ~ 329517 (-)
G290197 NA other downstream 450153 272397 ~ 279847 (-)
G292089 NA other upstream 900601 1635762 ~ 1693395 (-)
G292349 NA other upstream 1782917 2518078 ~ 2525409 (-)
G292387 NA other upstream 1998426 2733587 ~ 2743246 (-)
CI01000080_03207204_03212602 NA other upstream 2473824 3207204 ~ 3212913 (-)
G292714 NA other upstream 2980320 3715481 ~ 3728010 (-)

Expression


Co-expression Network