XLOC_010741 (BX511010.1)


Basic Information

Item Value
gene id XLOC_010741
gene name BX511010.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 26747753 ~ 26752205 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021018
CCAATTTTGAAAGGCAACAAGTTGcattatttcttttttgtgtCATACTGCAATAAATATGCAGTGGTTTTATTGTTGGCTTATTATTTTCTACTGTAGCTTCTACTGACCTGTATGTCATTGGCAGGATTCCAGTCTATATCATATAAAACGAGGTGAGAGGCACCGATGAGGTTTAGTCCCACTCCTCCAGCTTTGGAGCTGAGCAGCAGTAGAAAGCTGGACGAATGTGGGCTGTTGAAGGAATCAACAATTTTCTGCCGCTGGCCAACTGGTGTCTGTCCATCAAGACGACACCATTTATAGCCTATCTGATCACAGACGTCCTGGAGTAAGTCAAGAGTCTGTGTGTGGTTGGACACCAAAACAACCCTAGGGAGAAAAAGACAGAAGAAACTGGACATAAGACTGATAATAAAGCGATGACCTTCGTCACAGATGAGGACTCCAAAATCCAGTTCTTTCAGCCGGTCCACAGAGCGCAACAACATCTCATAGCTGATGACCAGGACGGAGCAAAGAGGAGAAGAAACAAAGTCTTCCACACGCCACTTGTTGAACTCAGCAGCCCAGTTCTTCACCAAACTTCCAGGACAAACCACAAGTGCTCTTTTCATTACGGGACGTCCACCATAGGGCCCCTGCCTGAGTAATGtccacaaaacacaaacacactgcagAGTTTTCCCCAATCCCATCTCATCTGCTAGAATCGCCCCACAGCGGCCAGCCAATCTGCGAAAACACAAACATGTGTGTAAACAAAGACGAGCATATGAAGAACATAGCAACAACCGATCAACTCTTATTTACCTCATTCCCATTAAGCATTCGTAAAGGAAGACCACGCCCTCTTTCTGATGTGGCCGAAGGTGATTGGTCAAGTGAGGGTCGATGACCACGTCAACCAGTGGAGCTCCAGATTTATTATACTGCCACTGGTGATCTGCTGTAGGCCGTGGCATCACCAGGGCTCCT
>TCONS_00021807
GGACACCAAAACAACCCTAGGGAGAAAAAGACAGAAGAAACTGGACATAAGACTGATAATAAAGCGATGACCTTCGTCACAGATGAGGACTCCAAAATCCAGTTCTTTCAGCCGGTCCACAGAGCGCAACAACATCTCATAGCTGATGACCAGGACGGAGCAAAGAGGAGAAGAAACAAAGTCTTCCACACGGTGATCCTGCAGAGACAACATATATATGctttaaaaaacacttatttttattCGAGGACATATGAAATTCAGTAACCGGCATTTAATGTAACAAAAAG
>TCONS_00022172
GGCAGGATTCCAGTCTATATCATATAAAACGAGGTGAGAGGCACCGATGAGGTTTAGTCCCACTCCTCCAGCTTTGGAGCTGAGCAGCAGTAGAAAGCTGGACGAATGTGGGCTGTTGAAGGAATCAACAATTTTCTGCCGCTGGCCAACTGGTGTCTGTCCATCAAGACGACACCATTTATAGCCTATCTGATCACAGACGTCCTGGAGTAAGTCAAGAGTCTGTGTGTGGTTGGACACCAAAACAACCCTAGGGAGAAAAAGACAGAAGAAACTGGACATAAGACTGATAATAAACTGGGCTGGCGAGATCGGAGAATGGGCTCTTCATAAATCTTCCTGTAGGCCGCAGATGTTCCCAGAATTCCTGGATTTACAAACTCGATGATTGAATAAAACTCCTGCAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097757

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021018 False 978 lncRNA 0.46 3 26747753 26752205
TCONS_00021807 False 290 lncRNA 0.41 2 26748428 26751849
TCONS_00022172 True 407 lncRNA 0.47 2 26748842 26752083

Neighbor

gene id symbol gene type direction distance location
XLOC_010740 NA coding downstream 15825 26719880 ~ 26731928 (-)
XLOC_010739 esrp1 coding downstream 71068 26645663 ~ 26676685 (-)
XLOC_010738 BX537166.2 coding downstream 105719 26619613 ~ 26642034 (-)
XLOC_010737 CR391910.3 coding downstream 146320 26601000 ~ 26601433 (-)
XLOC_010736 sgk2b coding downstream 210639 26530426 ~ 26537114 (-)
XLOC_010742 pdp1 coding upstream 64548 26816753 ~ 26820634 (-)
XLOC_010743 ino80c coding upstream 98276 26850481 ~ 26855945 (-)
XLOC_010744 tmem245 coding upstream 374268 27126473 ~ 27149202 (-)
XLOC_010745 LO017771.1 coding upstream 405478 27157683 ~ 27161410 (-)
XLOC_010746 frrs1l coding upstream 413952 27166157 ~ 27174373 (-)
XLOC_010626 CR392024.2 misc downstream 5852578 20895112 ~ 20895175 (-)
XLOC_010734 CR391910.2 non-coding downstream 240349 26503093 ~ 26507404 (-)
XLOC_010732 NA non-coding downstream 368297 26371697 ~ 26379456 (-)
XLOC_010748 NA non-coding upstream 603213 27355418 ~ 27373866 (-)
XLOC_010752 NA non-coding upstream 843357 27595562 ~ 27598677 (-)
XLOC_010756 NA non-coding upstream 1225761 27977966 ~ 28006936 (-)
XLOC_010767 NA non-coding upstream 2278477 29030682 ~ 29042101 (-)
XLOC_010769 CR938717.1 non-coding upstream 2403533 29155738 ~ 29155852 (-)

Expression


Co-expression Network