Gene
RNA
| Item | Value |
|---|---|
| gene id | G292123 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000080 |
| NCBI id | null |
| chromosome length | 5175454 |
| location | 1691380 ~ 1691674 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| unnamed protein product |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU331457 | True | 200 | lncRNA | 0.53 | 2 | 1691380 | 1691674 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000080_01584991_01585618 | NA | coding | downstream | 105671 | 1583859 ~ 1585709 (-) |
| CI01000080_01542470_01546061 | TMEM8C | coding | downstream | 144597 | 1542239 ~ 1546783 (-) |
| CI01000080_01514171_01520784 | SLC2A8 | coding | downstream | 170542 | 1514136 ~ 1520838 (-) |
| CI01000080_01500308_01505160 | NA | coding | downstream | 185966 | 1499877 ~ 1505414 (-) |
| CI01000080_01442459_01464557 | JAK2B | coding | downstream | 224374 | 1441985 ~ 1467006 (-) |
| CI01000080_01726615_01730435 | NA | coding | upstream | 34315 | 1725989 ~ 1730435 (-) |
| CI01000080_01732531_01763618 | KCNT1 | coding | upstream | 40716 | 1732390 ~ 1763618 (-) |
| CI01000080_01954854_01959161 | CFAP157 | coding | upstream | 263017 | 1954691 ~ 1959324 (-) |
| CI01000080_01980939_01981859 | NA | coding | upstream | 288630 | 1979746 ~ 1982199 (-) |
| CI01000080_01987220_01990307 | PTRH1 | coding | upstream | 294824 | 1986498 ~ 1990697 (-) |
| G292114 | NA | non-coding | downstream | 43136 | 1647565 ~ 1648244 (-) |
| G292085 | NA | non-coding | downstream | 59108 | 1632064 ~ 1632272 (-) |
| G292050 | NA | non-coding | downstream | 178775 | 1512333 ~ 1512605 (-) |
| G292044 | NA | non-coding | downstream | 196441 | 1494581 ~ 1494939 (-) |
| G292043 | NA | non-coding | downstream | 198577 | 1490295 ~ 1492803 (-) |
| G292103 | NA | non-coding | upstream | 30624 | 1722298 ~ 1723134 (-) |
| G292099 | NA | non-coding | upstream | 31675 | 1723349 ~ 1724367 (-) |
| G292102 | NA | non-coding | upstream | 33021 | 1724695 ~ 1725025 (-) |
| G292096 | NA | non-coding | upstream | 120737 | 1812411 ~ 1812972 (-) |
| G292176 | NA | non-coding | upstream | 270864 | 1962538 ~ 1966566 (-) |
| G292089 | NA | other | downstream | 19460 | 1635762 ~ 1693395 (-) |
| G290314 | NA | other | downstream | 1283236 | 407885 ~ 408144 (-) |
| G290261 | NA | other | downstream | 1361863 | 327689 ~ 329517 (-) |
| G290197 | NA | other | downstream | 1411533 | 272397 ~ 279847 (-) |
| G292349 | NA | other | upstream | 826404 | 2518078 ~ 2525409 (-) |
| G292387 | NA | other | upstream | 1041913 | 2733587 ~ 2743246 (-) |
| CI01000080_03207204_03212602 | NA | other | upstream | 1517311 | 3207204 ~ 3212913 (-) |
| G292714 | NA | other | upstream | 2023807 | 3715481 ~ 3728010 (-) |
