G292214


Basic Information

Item Value
gene id G292214
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 2090005 ~ 2090238 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU331569
GGTGGTCAAAATGTTATGCCTGATCGGTGTATGCAAGATATTGTTTTAATGTCCTTTTCCGCTGGTATTATGTATGAAAAAAAATAAAAATAAAAATTACCATTGTCTGACAAGCGCTGCAGGTTTAGTAGCATTATGTCGTAGTGAATGCGACAGAGAACCTGGTTCTCTATCAAGCCGAACTCCTCCCCTGTAGAAAGCTGCCTTTTACAGAAGATGCAAGCGAAGCAGGTA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU331569 True 234 lncRNA 0.40 1 2090005 2090238

Neighbor

gene id symbol gene type direction distance location
CI01000080_02057026_02085109 PTGS1 coding downstream 4896 2055395 ~ 2085109 (-)
CI01000080_02015292_02021186 PMPCA coding downstream 68418 2014384 ~ 2021587 (-)
CI01000080_01993914_01996596 NA coding downstream 93383 1993448 ~ 1996622 (-)
CI01000080_01987220_01990307 PTRH1 coding downstream 99308 1986498 ~ 1990697 (-)
CI01000080_01980939_01981859 NA coding downstream 107806 1979746 ~ 1982199 (-)
CI01000080_02113135_02116388 NA coding upstream 22856 2113094 ~ 2116388 (-)
CI01000080_02117016_02119929 PPIL3 coding upstream 26548 2116786 ~ 2119929 (-)
CI01000080_02122386_02126617 LRRC8AA, LRRC8AB, LRRC8A coding upstream 32070 2122308 ~ 2127055 (-)
CI01000080_02173438_02187618 OLFM1B, OLFM1A, OLFM1 coding upstream 83115 2173353 ~ 2188990 (-)
CI01000080_02305920_02313082 WDR5 coding upstream 214784 2305022 ~ 2313082 (-)
G292197 NA non-coding downstream 97011 1992714 ~ 1992994 (-)
G292176 NA non-coding downstream 123439 1962538 ~ 1966566 (-)
G292096 NA non-coding downstream 277033 1812411 ~ 1812972 (-)
G292102 NA non-coding downstream 364980 1724695 ~ 1725025 (-)
G292242 NA non-coding upstream 120605 2210843 ~ 2211065 (-)
G292262 NA non-coding upstream 173376 2263614 ~ 2266106 (-)
G292339 NA non-coding upstream 400876 2491114 ~ 2517180 (-)
G292387 NA non-coding upstream 643349 2733587 ~ 2743246 (-)
G292409 NA non-coding upstream 662897 2753135 ~ 2754693 (-)
G292089 NA other downstream 418085 1635762 ~ 1693395 (-)
G290314 NA other downstream 1681861 407885 ~ 408144 (-)
G290261 NA other downstream 1760488 327689 ~ 329517 (-)
G290197 NA other downstream 1810158 272397 ~ 279847 (-)
G292349 NA other upstream 427840 2518078 ~ 2525409 (-)
CI01000080_03207204_03212602 NA other upstream 1118747 3207204 ~ 3212913 (-)
G292714 NA other upstream 1625243 3715481 ~ 3728010 (-)

Expression


Co-expression Network