G292435


Basic Information

Item Value
gene id G292435
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 2831954 ~ 2832723 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU331840
TGAAAGTTAAAGTTTTATTAAAAATCAACCTAAGGACATAAAAGTGCCCAAAGTTAAAGAAACATCCACTTGTTGAATGAATTTGGAGAAATTACCTTCAGATGAGAGTGACTCCTGTAACTTACTGTAGGACATATCTAAGCAATAAGAGACAGATTTACCATCATCACTGGGATCTTCTCTAGGACCTCCATCCTCAGTCTCCGACAATGAGATGATATTAGGGGTCACAGATTTGCTCTGGAGGCTCTTGGAACATTTGGATCCTGTTGTCGGTGATTGTTTGCGATTCTGACTGCCTCTTTTCATTTTATTCTAATGGGTTATTGATTTTATCTGAGGAGGCGAGCGAACACGATGCTCATCCTAAATCAACTCGACTGCTAAAACGTAACTGCTAGTAGTTTCTTCTGCTTTATGTTAAAAAATTACAATGCAGACCAAATCTGACAAAATGCAAAGAACGAAAGTCATCTAATAACAAAAAAATGCATATTAAAAAGATTTTTTTACATTTAACTGCATGGTCACTCACTGTTTTAGGAAGACTCGTCAGTTTTTGTTAGCCCAGTTTCCATAGCGACCGGTTAGGATTTATAACAATCGTTCAGTAACCGTCAGATTATTATAATTCTCTCTTAAAAACTGTCAAAGCGGATACAAGCCTGTTACCTTTATCTCTTGTTCCAAGTGTCATATATAGTTCATGCGTTTCTAAAGGTTTAAACTGTGCTATCATTCTCTTTTCTGATTCTCTAGCACGAACTCAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU331840 True 770 lncRNA 0.36 1 2831954 2832723

Neighbor

gene id symbol gene type direction distance location
CI01000080_02675714_02724087 DNM1A, DNM1, DNM1B coding downstream 107867 2675714 ~ 2724087 (-)
CI01000080_02626826_02665868 NA coding downstream 166086 2626586 ~ 2665868 (-)
CI01000080_02396817_02403243 NA coding downstream 428711 2396817 ~ 2403243 (-)
CI01000080_02377623_02390372 QSOX2 coding downstream 440673 2376786 ~ 2391281 (-)
CI01000080_02371817_02374191 NA coding downstream 457763 2371747 ~ 2374191 (-)
CI01000080_02890744_02893801 BRAFLDRAFT_57441, RAB14L, RAB14 coding upstream 57811 2890534 ~ 2893801 (-)
CI01000080_02901179_02916041 NA coding upstream 68392 2901115 ~ 2917643 (-)
CI01000080_02998252_03001018 NA coding upstream 165385 2998108 ~ 3001673 (-)
CI01000080_03135523_03147452 PDXKA, PDXK coding upstream 302289 3135012 ~ 3147452 (-)
CI01000080_03187019_03196643 PKNOX1.1 coding upstream 353768 3186491 ~ 3196643 (-)
G292421 NA non-coding downstream 247 2829113 ~ 2831707 (-)
G292423 NA non-coding downstream 17060 2811897 ~ 2814894 (-)
G292420 NA non-coding downstream 20562 2790786 ~ 2811392 (-)
G292418 NA non-coding downstream 53615 2778071 ~ 2778339 (-)
G292412 NA non-coding downstream 72604 2759115 ~ 2759350 (-)
G292449 NA non-coding upstream 488 2833211 ~ 2833517 (-)
G292451 NA non-coding upstream 2105 2834828 ~ 2835176 (-)
G292452 NA non-coding upstream 2592 2835315 ~ 2835515 (-)
G292453 NA non-coding upstream 3534 2836257 ~ 2837476 (-)
G292460 NA non-coding upstream 19138 2851861 ~ 2852074 (-)
G292387 NA other downstream 88708 2733587 ~ 2743246 (-)
G292349 NA other downstream 306545 2518078 ~ 2525409 (-)
G292089 NA other downstream 1160034 1635762 ~ 1693395 (-)
G290314 NA other downstream 2423810 407885 ~ 408144 (-)
G290261 NA other downstream 2502437 327689 ~ 329517 (-)
CI01000080_03207204_03212602 NA other upstream 376262 3207204 ~ 3212913 (-)
G292714 NA other upstream 882758 3715481 ~ 3728010 (-)

Expression


Co-expression Network