G292486


Basic Information

Item Value
gene id G292486
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 2983926 ~ 2984409 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU331899
TGTAGTGATTTTTACTTTCGCCCATCCAAGGATGCGAAGTAAAATAGGGATTGGTACTCACGTCACCACTGACGTTGTAATTTTTGGATCACACGTCTCTTAAGGTGTGGTTATGAGTACATCAGATGACCACTTCCCCCCTTTTCCTAGTTCAGGGCACCATTCAAGGTCTTTACCTTGGCAGTATGAGAACACTCCCAACAGGGGCTTTCATTCATTTGGAGTTAATGTAAAGCGGTCAGCTGATTTATCTGAAAGATTGGTGAGATTGCTAACTTGTAGAGCCTTTTCTGTATTATCAGCACAAGGAAGACACAAGTGTAATAAAATAAATTTTATTAACAAAAGATAAACAAGAATAACTAACACAACTACTAAATGAATGCCATGAATGATAAAGGAATAAAGTGCATAAGATACATAGAATACAAGTGATTAAGTTGGGTGTGGCTATGGAAGAGTTACGTTATCTTATGGAAAGATA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU331899 True 484 lncRNA 0.37 1 2983926 2984409

Neighbor

gene id symbol gene type direction distance location
CI01000080_02901179_02916041 NA coding downstream 66283 2901115 ~ 2917643 (-)
CI01000080_02890744_02893801 BRAFLDRAFT_57441, RAB14L, RAB14 coding downstream 90125 2890534 ~ 2893801 (-)
CI01000080_02675714_02724087 DNM1A, DNM1, DNM1B coding downstream 259839 2675714 ~ 2724087 (-)
CI01000080_02626826_02665868 NA coding downstream 318058 2626586 ~ 2665868 (-)
CI01000080_02396817_02403243 NA coding downstream 580683 2396817 ~ 2403243 (-)
CI01000080_02998252_03001018 NA coding upstream 13699 2998108 ~ 3001673 (-)
CI01000080_03135523_03147452 PDXKA, PDXK coding upstream 150603 3135012 ~ 3147452 (-)
CI01000080_03187019_03196643 PKNOX1.1 coding upstream 202082 3186491 ~ 3196643 (-)
CI01000080_03199317_03204484 NA coding upstream 214791 3199200 ~ 3204484 (-)
CI01000080_03207204_03212602 NA coding upstream 222795 3207204 ~ 3212913 (-)
G292470 NA non-coding downstream 40355 2943228 ~ 2943571 (-)
G292467 NA non-coding downstream 55900 2927265 ~ 2928026 (-)
G292461 NA non-coding downstream 131355 2852157 ~ 2852571 (-)
G292460 NA non-coding downstream 131852 2851861 ~ 2852074 (-)
G292453 NA non-coding downstream 146450 2836257 ~ 2837476 (-)
G292496 NA non-coding upstream 43892 3028301 ~ 3028510 (-)
G292498 NA non-coding upstream 47153 3031562 ~ 3032341 (-)
G292503 NA non-coding upstream 68229 3052638 ~ 3052855 (-)
G292505 NA non-coding upstream 74687 3059096 ~ 3059348 (-)
G292506 NA non-coding upstream 75796 3060205 ~ 3060404 (-)
G292387 NA other downstream 240680 2733587 ~ 2743246 (-)
G292349 NA other downstream 458517 2518078 ~ 2525409 (-)
G292089 NA other downstream 1312006 1635762 ~ 1693395 (-)
G290314 NA other downstream 2575782 407885 ~ 408144 (-)
G290261 NA other downstream 2654409 327689 ~ 329517 (-)
G292714 NA other upstream 731072 3715481 ~ 3728010 (-)

Expression


Co-expression Network