G292560


Basic Information

Item Value
gene id G292560
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 3170453 ~ 3171145 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU331997
GCAGTTTCGAAGGCCGTGGGCAATTTGGGTAGTGGAATGAGTCGACAGGACTTTGAGAATCGGTCAATGACTGTGAGGATGGTTGTATTACCACAAGACTCGGGAAGGTCAGTGACGAAATCAATGGCAATGTGGGACCATGGGCGTTGTGGTATGGGAAGTGACTGAAGAAGACCAGATGGTAGTTGACAGGATGGTTTGGAGGTTTGACAAGCTGCACAGTTATTAACAAACTGGGTGGTGTCTGCTAGCATTGTAGCCCACCAGAAACGGTTCTGTAGTAGATGGAATGTGGCGGTGATACCCGGATGACCAGAACTGAGAAGAGCGTGGACTTGGTGCAGGAGCTTGGTGCGTAGAGGAGCTGGAACAAACGTGCAATCTTGGGGACATTCTGGAGGTGGTAAGTTCTACTCATTGCTTTGTGTGATCTCGGTCATAATATCCCATTGTACTGGGGCAACTAGCAGGTTCTCGGAGAGAATGTGTTCCTCCGTGTCTGGCCTTTCGATCTCCTCCACTTGACGAAACAGTGCATCTGCCTTGGTATTTTTGGAACCTGGTCGATATGTAACAGTAAACTGGAATCTGGTAAAAAACATGGCCCATCTTGCCTGTCTGGGATTCAGTCGTTTAGCCAAACGTAAGTATTCCAAATTTTTGTGATCGGTGAGAATGGTGAATGGATGTTGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU331997 True 693 lncRNA 0.48 1 3170453 3171145

Neighbor

gene id symbol gene type direction distance location
CI01000080_03135523_03147452 PDXKA, PDXK coding downstream 23001 3135012 ~ 3147452 (-)
CI01000080_02998252_03001018 NA coding downstream 168780 2998108 ~ 3001673 (-)
CI01000080_02901179_02916041 NA coding downstream 252810 2901115 ~ 2917643 (-)
CI01000080_02890744_02893801 BRAFLDRAFT_57441, RAB14L, RAB14 coding downstream 276652 2890534 ~ 2893801 (-)
CI01000080_02675714_02724087 DNM1A, DNM1, DNM1B coding downstream 446366 2675714 ~ 2724087 (-)
CI01000080_03187019_03196643 PKNOX1.1 coding upstream 15346 3186491 ~ 3196643 (-)
CI01000080_03199317_03204484 NA coding upstream 28055 3199200 ~ 3204484 (-)
CI01000080_03207204_03212602 NA coding upstream 36059 3207204 ~ 3212913 (-)
CI01000080_03225699_03250598 PDE9A coding upstream 54422 3225567 ~ 3251467 (-)
CI01000080_03259702_03274657 SLC37A1 coding upstream 88228 3259373 ~ 3274657 (-)
G292558 NA non-coding downstream 1655 3168562 ~ 3168798 (-)
G292557 NA non-coding downstream 2421 3167787 ~ 3168032 (-)
G292554 NA non-coding downstream 42194 3127748 ~ 3128259 (-)
G292506 NA non-coding downstream 110049 3060205 ~ 3060404 (-)
G292505 NA non-coding downstream 111105 3059096 ~ 3059348 (-)
G292562 NA non-coding upstream 853 3171998 ~ 3172205 (-)
G292563 NA non-coding upstream 1142 3172287 ~ 3172553 (-)
G292565 NA non-coding upstream 2832 3173977 ~ 3174258 (-)
G292567 NA non-coding upstream 5405 3176550 ~ 3177173 (-)
G292387 NA other downstream 427207 2733587 ~ 2743246 (-)
G292349 NA other downstream 645044 2518078 ~ 2525409 (-)
G292089 NA other downstream 1498533 1635762 ~ 1693395 (-)
G290314 NA other downstream 2762309 407885 ~ 408144 (-)
G290261 NA other downstream 2840936 327689 ~ 329517 (-)
G292714 NA other upstream 544336 3715481 ~ 3728010 (-)

Expression


Co-expression Network