G292590



Basic Information


Item Value
gene id G292590
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 3341071 ~ 3380066 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU332032
AAAGCTTGGGGTAATTTTCATTTGAAAGTGAACTAATCCTTTAAGCAGCACAACACTCATCATATTTCAACATTGATAATAATAAAAAATGTTTCAAATCATCATATTAGAATGATTTCTGAAGGATCAGGCGACACTGAAGACTAGAGAAATGATGCTGAAAGTCAGCTTTGCATCACAGGAATAAATTACATTTTAAAATATATTACAATTTTATTTTAAATTGTAGTAATTTTTTCACAATATTATTCTACTTTTTTTTTTTTGTCAAATAGATTCTGCCTTTTTGAAACATAAGAGAAATCTTACAGATCTTACAGACCCCAAACTTTCAAACAGTAGTGTGGTTTTGTCTCAAATTCATAATACTTCTTAAAAATCAGTACATTGAAATGTACTACCATGAACTGCAAGGTTCAACAATATGCAAAATTATTAACATGACAGAGACTGAAAAGGAAATATATGAATATATATTAATATTAAAAATAAAAAGCGTTTTACCAGCCAAACACATGGAACAAACACTGGACCCAGTACTGCATTAATATTATCACCAAATGCCAGGTGGATTTGCACATAAATACTGTACACTTTGACACCAACATCAAAAGATATGGTAGACATTTACTCCTCCTTTAAAAAGGTAATATGATTATTTATTGCTATCCCAATAACACAGCATTATATAGTCAGTTGCACTGCATTATAAGCATTTAGCATTGTTTTTCCCCTGCAACCCACCAGTTGAGAACCACTATGCGATTGTCCAAGAGCATCAGATTTACCTGGATTCACCATGTTGGCAGCATGGCTGGAGACGGGCAGACAGTCTGCGGCTCCGCTGTGGTGCATGAGCAGCGGCAGAGCAGCTGAATCTCCGCTCAGAGTTGTGAAGGAATCGGTGGTGCTGAAGGCCTGGCAGGTCATGACTCTAGATACTCGGGGTCTGTGTCCTGCACGTGCGACAGCAGCCCACCTGTGTGACACGAGCAGGGCGTGTGCAGCAGCTGAAACAATGAATTGATTTTCCAACGTCCAAAGAATTCTTTATATCAAAAACACTCAAACCATATTGCAGAGACTGCGTGCCGTCAGGAGGACAGTTTCTCAGCATATGCTCACAGACAAAATGTGTCCATTGTTCAGAGTTTGCATGATTTGCATGTATCTACTGCACTATGCAACAGTTCCCGAATAGTTTTTACAAAACTAAAGGCTTAGCAAAG
>TU332033
CTGCCATCATGCCGTAGGTGGTCTGCTGGTTGCTATAGTGACATGGGGGCATTGGGTAGTGCAGGCTGGCTGAGGCATTACTTAAAGCAGAAGTGGACAGGTGCATATGAGAGCGTTTGGATGACTGGACCAGTGGGAGACCTGAGTGGACTAAACCAGAACTGGATTCACCATGTTGGCAGCATGGCTGGAGACGGGCAGACAGTCTGCGGCTCCGCTGTGGTGCATGAGCAGCGGCAGAGCAGCTGAATCTCCGCTCAGAGTTGTGAAGGAATCGGTGGTGCTGAAGGCCTGGCAGGTCATGACTCTAGATACTCGGGGTCTGTGTCCTGCACGTGCGACAGCAGCCCACCTGTGTGACACGAGCAGGGCGTGTGCAGCAGCTGAAACAATGAATTGATTTTCCAACGTCCAAAGAATTCTTTATATCAAAAACACTCAAACCATATTGCAGAGACTGCGTGCCGTCAGGAGGACAGTTTCTCAGCATATGCTCACAGACAAAATGTGTCCATTGTTCAGAGTTTGCATGATTTGCATGTATCTACTGCACTATGCAACAGTTCCCGAATAGTTTTTACAAAACTAAAGGCTTAGCAAAG
>TU332034
CTGCCATCATGCCGTAGGTGGTCTGCTGGTTGCTATAGTGACATGGGGGCATTGGGTAGTGCAGGCTGGCTGAGGCATTACTTAAAGCAGAAGTGGACAGGTGCATATGAGAGCGTTTGGATGACTGGACCAGTGGGAGACCTGAGTGGACTAAACCAGAAACTAATATCATGTCATGATACATCCTAGACAGATAGATAGATAGATAGACAGACAGACCGATAGATAGATAGATAGGTAGATATGCATTATTAATATGCAAAAAAGATCCCTCAAATTCTGGATGCATCTAAAATCAAGTACCAAAGAATCACTACATTTTAAAGCATTACAAACCCAAGAACTGAACCCCGAAAAAAGTTCCCTCAGTCAGCTGGTTCTGAGACTTACTAACCTGACTAACTCTACTAACACTAACCAGTCTCAGACCAGCACTGCTTCTCATCCAAATATCAAAATAAACCAAATTTTCAAACAATCTAAAAATACATATCTGGAACATTGGGATCAGGAAACTAAAACACAAAGTAAATTACAATTCTATCGAACTCTAAAATCAAATTATGAATTAGAAGAATATCTCTAAAGTGTCAAAGACTCAAAACAGAGACGAATCCTGACCAAGTACAGGCTCAGTGAGCACAGTCTAGCCATCGAGACCGGCAGACACAGAAAGAGCTGGTTACCCAGAGAGCAAAGGGTGTGTGTTCACTGTAGGACAGGAGAGATCAAGACAGAGACGCACTTCCTCCTTCTCTGCCACAAATACATACCTATAAGAGATCTCTACTTAAATAAATTCAGCAACTCAATAAAGAACTTTACAGCCATGACTGAAGTAGAACAAATAAAGATAATACTAGGAGAGGGACAGACAGCAGCACTGGCTGCGAGATACGTGTAGATGTGCCACAGCCTGAGAGACAGCAGGTGAATGTGTGTAATGTATGTGTCTGACCTCAGTGTGTTTCCCTACTGTCCACCACAGTGACCCTCAGTACGTGTGTATATATGTTAAAACACTGTGGTATCAAATGTTCAGACATGTTCTAATTTGTTACACTGTTGATTTAAGTTTAAGGTATGTTATAATATTTGATAATATTTTCTTCTATACAGATGTTTTTATTATTGTTTTATGTATATATGCTTTGGCAATATTGTATTATTTACAGTCATGCCAATAAAGCAATTTTGAATTGAATTGAATTGAATAGAATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGAAAGACAGACAGACAGACAGACAGACAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGACAGACACAGATAGATAGATAGATAGATAGATAGATAGACAGATGAAAGACAGACAGACAGACAGACAGATAGATAGATAGATAGACAGATAGATAGATAGACATAGATAGATAGATAGATAGATAGATAGATAGAAAGACAGACAGACAGACAGACAGATAGATAGATAGATAGACAGACGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGACAGACAGACAGACATAGATAGATAGATAAACACAGATGATAGATAGACACACACAGACAGACAGACAGACAGACAGATAGATAGATAGATAGATAGATAGATAGATAGACAGACACAGACAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAAAAAAACAAAAAACAAACTTTTCACTGATTTATACAGAGTTTTGTAAAGAGCAACTGATTACTTTGCTTTAAATTGGTAAAAGAAGCACTGCCACATTTCCTGAACCTCAAAGCCTCATCTCTGCCTGAGGTGACATTTACACAAATAATTCATTATTGCAGTAATTATGAATACCAGATTGTATAATTCCTTCCTTCATCAAATGCATCTGAAAATAAAATTAAACTCATTTAATGAAGGAAAGCAGGTATGTAAATACAGATAATAGTTCTTAATATGCACAGTGACCTCCGGCTGTCAGAGCTACAGAACATTCAATTGAATTTCATTCAGATCAGAGTAAACCTGTGGGTGGTAATCAAACTCAACAAGCAGTGCTACATCTTTCTGAGACCAACCTCCACTAACACTTGTGTCAAGATGATCTCCTTATACAGGCTGGCCTTGTCCGGTAGAGCACGCACAAGATTGCCATTAAAATGATGTGATCAGCTTTTTGTTCAGATACACTAACTGCTACATTATGATAATTAGCTCTTCACACTTTCAGATAGTTGTATAACCTGACATTCCCAGGCTTCACTATCTGCAGGTGGAAGCGTGGCTGAGTTAACAGAGGTCATATGTGTATGAATAGAAATGCCAAAACATTTCATTCGAGAGTTTTGCATCTTCTGGCTCAGAGCCCGAGCTAAATTGCACAGTTCAGTAATTATGCATAAGAACTATGATTTACTATGGCAAACAATAAGCAGAGATTTGACTCAATTCAATGAGTTTCTGACAAGACTTTCACTAATGCTCTCTCGCGTGTGAGACAAAACTGGGGCAAAAATAAGTACTTGATAATTTAGCAATCAACATGTCAAAGTAATAATATGTCTGCTTTGATAATTATCTACGGAGAAGTAACAGCTGTGCAAATTGAGCTGATTAGCCACGTCTACATAATTTTGATTTATTTCAACAAATTACTATTTGTCTTGGCAGTCGCTTCTCTGCTCCCTAAAGTAGCTGTGAGCGGTGTCGTCCAAAACCATCTGACTAATGTACACTTTCAAAACTTTGGGGTCAGTAAAATTTTATTGATTTTTTATTACTTTTATTCAGGACATGTTAAATTGATCAGAAGTAACATTTATAATGTTACAAAAAAATATATTTCAAATTTTGAACCTTCATTAATCAAAGAATCCTGGAAAAAAAATGTATCACAGTTGCCACAAAAATATTAAGCATGACACAACTGTTTTCAACATTGATAATAATAAGCATTGATAATAATTATCTATCTAATGCTTCTTCAGCATCAAATCAGCATATTAGAATGATTTCTGAAGGATCATGTGACACTGAAGACTGGAGTAATGATGCTGAAAATTCAGCTTTGATCACAGGAACAAATTACATTTTAAAATATATTCAAATAGAAAACAGTTATTTGAAATTGTAAAAAATAAAATAAAAAAATAATTCACAATATTACTGCTTTTACTGTATTTTTGATCAAATAAATGCAGCCTTGTTGAACAAAGGAGACAAAAAAATTGCAGAAAAATGGGTGTTTCTGATATAAAAAGACATTGCTTGATGCATTATACTTTTGATTTGGTGATATTTCTCTAAAAACATTTCCCCTGGGAAAAAGAGATGTGATCTCTGGAAAGGTCACTTCCTCAGAGTGAGTCAGACAGACGGTGAGTGATGACAGCAGTCAGGACTTGAGATAATACCAAATAAAATGTGAACTTTAGGGTCATATAGACTAGGTCGAAAGGACATTTGCTCATAGTCCAGTCTCTCTCTCTTTTATCACCTTGCTCTTGTTCCTTGTTTTTTTTTTTTTTTCATAAAAATAAAAAATAAAAATCCTCTATGGGAAGTATTCCCACTAGACAAATGCTGTCATCTCAGAGTTGAGACTGATCTACAAAAAGTTCAACTTTCCATAAGTTCTACTTATTTCATATGTAATATTTGCAGCTTCTTTCTTTTCCGTGAGTTGGGTTATTTGTACGTATACTTAGAAGTGTTTCAAAAGTGACAGTAAAGACATTTATAATGTGAAAGAAATTCTATTTCAAATAAATGCTGTTCTTTTCGACTTTCTATTCATCAAAGAATAAAAAAAAGTGTCACCTTTCCACAGAAATATTAAAGGATTAGTTGACTTTCAAATGAAAA

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA


RNA id representative length rna type GC content exon number start site end site
TU332032 False 1229 lncRNA 0.38 2 3341071 3373532
TU332033 False 602 lncRNA 0.50 3 3341071 3380066
TU332034 True 3932 lncRNA 0.35 4 3374290 3380066

Neighbor


gene id symbol gene type direction distance location
CI01000080_03309401_03310494 HTR1FA coding downstream 30577 3309337 ~ 3310494 (-)
CI01000080_03259702_03274657 SLC37A1 coding downstream 66414 3259373 ~ 3274657 (-)
CI01000080_03225699_03250598 PDE9A coding downstream 89604 3225567 ~ 3251467 (-)
CI01000080_03207204_03212602 NA coding downstream 128469 3207204 ~ 3212913 (-)
CI01000080_03199317_03204484 NA coding downstream 136587 3199200 ~ 3204484 (-)
CI01000080_03390711_03395563 NA coding upstream 10561 3390627 ~ 3395563 (-)
CI01000080_03421006_03421194 NA coding upstream 40709 3420775 ~ 3421194 (-)
CI01000080_03460127_03482686 T2FB, GTF2F2A, GTF2F2B, GTF2F2 coding upstream 80061 3460127 ~ 3482686 (-)
CI01000080_03546606_03550758 NA coding upstream 166225 3545836 ~ 3550966 (-)
CI01000080_03599356_03610857 LACC1 coding upstream 219057 3599123 ~ 3610942 (-)
G292567 NA non-coding downstream 163898 3176550 ~ 3177173 (-)
G292565 NA non-coding downstream 166813 3173977 ~ 3174258 (-)
G292563 NA non-coding downstream 168518 3172287 ~ 3172553 (-)
G292562 NA non-coding downstream 168866 3171998 ~ 3172205 (-)
G292596 NA non-coding upstream 3647 3383713 ~ 3386192 (-)
G292606 NA non-coding upstream 11721 3391787 ~ 3423582 (-)
G292623 NA non-coding upstream 36358 3416424 ~ 3453582 (-)
G292650 NA non-coding upstream 83674 3463740 ~ 3464208 (-)
G292620 NA non-coding upstream 149319 3529385 ~ 3541856 (-)
G292387 NA other downstream 597825 2733587 ~ 2743246 (-)
G292349 NA other downstream 815662 2518078 ~ 2525409 (-)
G292089 NA other downstream 1669151 1635762 ~ 1693395 (-)
G290314 NA other downstream 2932927 407885 ~ 408144 (-)
G292714 NA other upstream 335415 3715481 ~ 3728010 (-)

Expression



Co-expression Network