Item | Value |
---|---|
gene id | G292590 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000080 |
NCBI id | null |
chromosome length | 5175454 |
location | 3341071 ~ 3380066 (-) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU332032 | False | 1229 | lncRNA | 0.38 | 2 | 3341071 | 3373532 |
TU332033 | False | 602 | lncRNA | 0.50 | 3 | 3341071 | 3380066 |
TU332034 | True | 3932 | lncRNA | 0.35 | 4 | 3374290 | 3380066 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000080_03309401_03310494 | HTR1FA | coding | downstream | 30577 | 3309337 ~ 3310494 (-) |
CI01000080_03259702_03274657 | SLC37A1 | coding | downstream | 66414 | 3259373 ~ 3274657 (-) |
CI01000080_03225699_03250598 | PDE9A | coding | downstream | 89604 | 3225567 ~ 3251467 (-) |
CI01000080_03207204_03212602 | NA | coding | downstream | 128469 | 3207204 ~ 3212913 (-) |
CI01000080_03199317_03204484 | NA | coding | downstream | 136587 | 3199200 ~ 3204484 (-) |
CI01000080_03390711_03395563 | NA | coding | upstream | 10561 | 3390627 ~ 3395563 (-) |
CI01000080_03421006_03421194 | NA | coding | upstream | 40709 | 3420775 ~ 3421194 (-) |
CI01000080_03460127_03482686 | T2FB, GTF2F2A, GTF2F2B, GTF2F2 | coding | upstream | 80061 | 3460127 ~ 3482686 (-) |
CI01000080_03546606_03550758 | NA | coding | upstream | 166225 | 3545836 ~ 3550966 (-) |
CI01000080_03599356_03610857 | LACC1 | coding | upstream | 219057 | 3599123 ~ 3610942 (-) |
G292567 | NA | non-coding | downstream | 163898 | 3176550 ~ 3177173 (-) |
G292565 | NA | non-coding | downstream | 166813 | 3173977 ~ 3174258 (-) |
G292563 | NA | non-coding | downstream | 168518 | 3172287 ~ 3172553 (-) |
G292562 | NA | non-coding | downstream | 168866 | 3171998 ~ 3172205 (-) |
G292596 | NA | non-coding | upstream | 3647 | 3383713 ~ 3386192 (-) |
G292606 | NA | non-coding | upstream | 11721 | 3391787 ~ 3423582 (-) |
G292623 | NA | non-coding | upstream | 36358 | 3416424 ~ 3453582 (-) |
G292650 | NA | non-coding | upstream | 83674 | 3463740 ~ 3464208 (-) |
G292620 | NA | non-coding | upstream | 149319 | 3529385 ~ 3541856 (-) |
G292387 | NA | other | downstream | 597825 | 2733587 ~ 2743246 (-) |
G292349 | NA | other | downstream | 815662 | 2518078 ~ 2525409 (-) |
G292089 | NA | other | downstream | 1669151 | 1635762 ~ 1693395 (-) |
G290314 | NA | other | downstream | 2932927 | 407885 ~ 408144 (-) |
G292714 | NA | other | upstream | 335415 | 3715481 ~ 3728010 (-) |