G292623


Basic Information

Item Value
gene id G292623
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 3416424 ~ 3453582 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU332072
GGCTCAGGGCCAGCGCTGTGTTTGGAGTCAACCGGGCCGGATAGCAGGGTTCTCAGGGACACCCAGACAGACAGGAGGCAGCTGTGGATCGCAGATGCATGCTGCATGGACACTACATCTGTAGCTGAGCTAGTTTCTCTGGATTAAAAACATTTCATCCAGAGATGTTTCCAAGCAGTGATTATCAACCAAAGAGTGAAGTCTGCCAGTTTTAGCGTCATTGCTGAAGGCGCTGGGCTGGCTCAGAGCACGTGAGAAATGTTCGTCCACCACATCCCCGATGTCTCCACGGAAATAGGTGAACACCACACACCTGGCACTCAAGTACTCGGCCTCGGCGGGCTGCGTCTCCTTGCAGCGCTCCTCTTCCCCAGCATTCTGCTCCTCCTCTGGCGGAAGCTCAGGCTCAGGACGGGGCTTCAGCGCTCCAGGCTGCTTATTCTGGCCACAGTGAGAGGGAAACTCCTCAGAATCCTGCATCCTGCTGTAGGCACCGAACTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU332072 True 502 lncRNA 0.56 3 3416424 3453582

Neighbor

gene id symbol gene type direction distance location
CI01000080_03390711_03395563 NA coding downstream 20861 3390627 ~ 3395563 (-)
CI01000080_03309401_03310494 HTR1FA coding downstream 105930 3309337 ~ 3310494 (-)
CI01000080_03259702_03274657 SLC37A1 coding downstream 141767 3259373 ~ 3274657 (-)
CI01000080_03225699_03250598 PDE9A coding downstream 164957 3225567 ~ 3251467 (-)
CI01000080_03207204_03212602 NA coding downstream 203822 3207204 ~ 3212913 (-)
CI01000080_03460127_03482686 T2FB, GTF2F2A, GTF2F2B, GTF2F2 coding upstream 6545 3460127 ~ 3482686 (-)
CI01000080_03546606_03550758 NA coding upstream 92709 3545836 ~ 3550966 (-)
CI01000080_03599356_03610857 LACC1 coding upstream 145541 3599123 ~ 3610942 (-)
CI01000080_03768413_03792359 DNAJC15 coding upstream 314601 3768183 ~ 3792412 (-)
CI01000080_03823638_03839211 NA coding upstream 369851 3823433 ~ 3839456 (-)
G292596 NA non-coding downstream 30232 3383713 ~ 3386192 (-)
G292590 NA non-coding downstream 36358 3341071 ~ 3380066 (-)
G292567 NA non-coding downstream 239251 3176550 ~ 3177173 (-)
G292565 NA non-coding downstream 242166 3173977 ~ 3174258 (-)
G292650 NA non-coding upstream 10158 3463740 ~ 3464208 (-)
G292620 NA non-coding upstream 75803 3529385 ~ 3541856 (-)
G292700 NA non-coding upstream 158097 3611679 ~ 3611931 (-)
G292794 NA non-coding upstream 229922 3683504 ~ 3684180 (-)
G292387 NA other downstream 673178 2733587 ~ 2743246 (-)
G292349 NA other downstream 891015 2518078 ~ 2525409 (-)
G292089 NA other downstream 1744504 1635762 ~ 1693395 (-)
G290314 NA other downstream 3008280 407885 ~ 408144 (-)
G292714 NA other upstream 261899 3715481 ~ 3728010 (-)

Expression


Co-expression Network