Gene
RNA
| Item | Value |
|---|---|
| gene id | G292969 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000080 |
| NCBI id | null |
| chromosome length | 5175454 |
| location | 4216817 ~ 4217152 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU332481 | True | 336 | lncRNA | 0.36 | 1 | 4216817 | 4217152 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000080_04199562_04201445 | KBTBD7 | coding | downstream | 15220 | 4199267 ~ 4201597 (-) |
| CI01000080_04196209_04198578 | NA | coding | downstream | 18239 | 4195062 ~ 4198578 (-) |
| CI01000080_04185680_04192219 | RGCC | coding | downstream | 24598 | 4185146 ~ 4192219 (-) |
| CI01000080_04006295_04009794 | NA | coding | downstream | 207023 | 4006181 ~ 4009794 (-) |
| CI01000080_03972165_03981008 | NA | coding | downstream | 234052 | 3972131 ~ 3982765 (-) |
| CI01000080_04226079_04237658 | SLAIN1A | coding | upstream | 8876 | 4226028 ~ 4237658 (-) |
| CI01000080_04239679_04243440 | NA | coding | upstream | 22233 | 4239385 ~ 4243440 (-) |
| CI01000080_04380060_04382833 | CLN5 | coding | upstream | 162875 | 4380027 ~ 4382833 (-) |
| CI01000080_04488197_04502798 | NA | coding | upstream | 270679 | 4487831 ~ 4504534 (-) |
| CI01000080_04517413_04566482 | EPHA3 | coding | upstream | 299753 | 4516905 ~ 4566695 (-) |
| G292968 | NA | non-coding | downstream | 241 | 4216163 ~ 4216576 (-) |
| G292967 | NA | non-coding | downstream | 21944 | 4194584 ~ 4194873 (-) |
| G292954 | NA | non-coding | downstream | 38963 | 4177509 ~ 4177854 (-) |
| G292951 | NA | non-coding | downstream | 45967 | 4170589 ~ 4170850 (-) |
| G292949 | NA | non-coding | downstream | 49389 | 4166868 ~ 4167428 (-) |
| G292975 | NA | non-coding | upstream | 433 | 4217585 ~ 4218008 (-) |
| G293021 | NA | non-coding | upstream | 101901 | 4319053 ~ 4321673 (-) |
| G293056 | NA | non-coding | upstream | 215397 | 4432549 ~ 4432819 (-) |
| G293085 | NA | non-coding | upstream | 284004 | 4501156 ~ 4501434 (-) |
| G293093 | NA | non-coding | upstream | 419949 | 4637101 ~ 4637336 (-) |
| G292714 | NA | other | downstream | 488807 | 3715481 ~ 3728010 (-) |
| CI01000080_03207204_03212602 | NA | other | downstream | 998414 | 3207204 ~ 3212913 (-) |
| G292387 | NA | other | downstream | 1473571 | 2733587 ~ 2743246 (-) |
| G292349 | NA | other | downstream | 1691408 | 2518078 ~ 2525409 (-) |
| G292089 | NA | other | downstream | 2544897 | 1635762 ~ 1693395 (-) |
