Item | Value |
---|---|
gene id | G293085 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000080 |
NCBI id | null |
chromosome length | 5175454 |
location | 4501156 ~ 4501434 (-) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU332620 | True | 279 | lncRNA | 0.29 | 1 | 4501156 | 4501434 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000080_04380060_04382833 | CLN5 | coding | downstream | 118323 | 4380027 ~ 4382833 (-) |
CI01000080_04239679_04243440 | NA | coding | downstream | 257716 | 4239385 ~ 4243440 (-) |
CI01000080_04226079_04237658 | SLAIN1A | coding | downstream | 263498 | 4226028 ~ 4237658 (-) |
CI01000080_04199562_04201445 | KBTBD7 | coding | downstream | 299559 | 4199267 ~ 4201597 (-) |
CI01000080_04196209_04198578 | NA | coding | downstream | 302578 | 4195062 ~ 4198578 (-) |
CI01000080_04517413_04566482 | EPHA3 | coding | upstream | 15471 | 4516905 ~ 4566695 (-) |
CI01000080_04578958_04583985 | NA | coding | upstream | 77054 | 4578488 ~ 4584364 (-) |
CI01000080_04611752_04614340 | EPHA3 | coding | upstream | 109125 | 4610559 ~ 4614340 (-) |
CI01000080_04778886_04784529 | NA | coding | upstream | 277177 | 4778611 ~ 4784529 (-) |
CI01000080_04911814_04914963 | NA | coding | upstream | 410308 | 4911742 ~ 4914963 (-) |
G293056 | NA | non-coding | downstream | 68337 | 4432549 ~ 4432819 (-) |
G293021 | NA | non-coding | downstream | 179483 | 4319053 ~ 4321673 (-) |
G292975 | NA | non-coding | downstream | 283148 | 4217585 ~ 4218008 (-) |
G292969 | NA | non-coding | downstream | 284004 | 4216817 ~ 4217152 (-) |
G292968 | NA | non-coding | downstream | 284580 | 4216163 ~ 4216576 (-) |
G293093 | NA | non-coding | upstream | 135667 | 4637101 ~ 4637336 (-) |
G293104 | NA | non-coding | upstream | 155319 | 4656753 ~ 4657005 (-) |
G293209 | NA | non-coding | upstream | 206568 | 4708002 ~ 4708225 (-) |
G293242 | NA | non-coding | upstream | 210553 | 4711987 ~ 4712189 (-) |
G293255 | NA | non-coding | upstream | 237415 | 4738849 ~ 4739286 (-) |
G292714 | NA | other | downstream | 773146 | 3715481 ~ 3728010 (-) |
CI01000080_03207204_03212602 | NA | other | downstream | 1282753 | 3207204 ~ 3212913 (-) |
G292387 | NA | other | downstream | 1757910 | 2733587 ~ 2743246 (-) |
G292349 | NA | other | downstream | 1975747 | 2518078 ~ 2525409 (-) |
G292089 | NA | other | downstream | 2829236 | 1635762 ~ 1693395 (-) |