G293085



Basic Information


Item Value
gene id G293085
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 4501156 ~ 4501434 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU332620
TCCAGCCTTCATGAACAATTATATACCACTTATAAATGACTAAATACAAAATTAATAATAGTTATTAAGATTAATGTGGTTTGGAATTGGTAAGATGGAAAAAAAAAAAAAAAAACATGATCAGAAAATTGACGTGACTAATAATTCTGCATGCACTGTATACATGTCATTTCTTTCTTACTTTCTCTCTTTTTGAAATAAATCTTTTTCTAGGCATCGGATTATTATTAACAGTCAACATTCGGAGGCACTATCTAATTTGTGGGATTTAACTGCTCT

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA


RNA id representative length rna type GC content exon number start site end site
TU332620 True 279 lncRNA 0.29 1 4501156 4501434

Neighbor


gene id symbol gene type direction distance location
CI01000080_04380060_04382833 CLN5 coding downstream 118323 4380027 ~ 4382833 (-)
CI01000080_04239679_04243440 NA coding downstream 257716 4239385 ~ 4243440 (-)
CI01000080_04226079_04237658 SLAIN1A coding downstream 263498 4226028 ~ 4237658 (-)
CI01000080_04199562_04201445 KBTBD7 coding downstream 299559 4199267 ~ 4201597 (-)
CI01000080_04196209_04198578 NA coding downstream 302578 4195062 ~ 4198578 (-)
CI01000080_04517413_04566482 EPHA3 coding upstream 15471 4516905 ~ 4566695 (-)
CI01000080_04578958_04583985 NA coding upstream 77054 4578488 ~ 4584364 (-)
CI01000080_04611752_04614340 EPHA3 coding upstream 109125 4610559 ~ 4614340 (-)
CI01000080_04778886_04784529 NA coding upstream 277177 4778611 ~ 4784529 (-)
CI01000080_04911814_04914963 NA coding upstream 410308 4911742 ~ 4914963 (-)
G293056 NA non-coding downstream 68337 4432549 ~ 4432819 (-)
G293021 NA non-coding downstream 179483 4319053 ~ 4321673 (-)
G292975 NA non-coding downstream 283148 4217585 ~ 4218008 (-)
G292969 NA non-coding downstream 284004 4216817 ~ 4217152 (-)
G292968 NA non-coding downstream 284580 4216163 ~ 4216576 (-)
G293093 NA non-coding upstream 135667 4637101 ~ 4637336 (-)
G293104 NA non-coding upstream 155319 4656753 ~ 4657005 (-)
G293209 NA non-coding upstream 206568 4708002 ~ 4708225 (-)
G293242 NA non-coding upstream 210553 4711987 ~ 4712189 (-)
G293255 NA non-coding upstream 237415 4738849 ~ 4739286 (-)
G292714 NA other downstream 773146 3715481 ~ 3728010 (-)
CI01000080_03207204_03212602 NA other downstream 1282753 3207204 ~ 3212913 (-)
G292387 NA other downstream 1757910 2733587 ~ 2743246 (-)
G292349 NA other downstream 1975747 2518078 ~ 2525409 (-)
G292089 NA other downstream 2829236 1635762 ~ 1693395 (-)

Expression



Co-expression Network