XLOC_010767


Basic Information

Item Value
gene id XLOC_010767
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 29030682 ~ 29042101 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021808
aaaaatgtCACTTCCTTTATCAAAAATAGAGAACTTTCTTAATTAAGTTCCTCTGGTTTTATTATGTAATAACACTGTATATTATCATTGTTCTGCTTTCTGAAGTTGACACAAATTTGTCAGCATGAAAGCATAACAGGGTGGATTTAATCTCACTCCTGTTTTTCATTCAGAAGTTTTCTGTGGATTGTGAAGGCGAGCGTGTACAATGGAAGAGGAGTTGTGCTATTCAACAGTGAGCTTCAAGACTTTTGACAATGACAAATCTGCAGtGCCAGAGTATGTTGAATCTGTATTGTATGCAGAGGTGAAAGGAGGAAAATCAGCTTCAAAGAGCCCCCCTGAAACCACAGAAAAAAGCGTGAAGAGCTCAATCTCTCCAGCATACAGACGAGATGCAGTGATTCTGGGTCTGCTCTGTTTCCTCCTGTTTGCTGTGTTAACGGCGCTCAGCATTTTCAGCTACATTTACAGGTTGAAATACAACAATAGTCAGGTCCAGTTCACTAAAGAGAGAGACGCCAACCTGCTGTTACAGGCAGAAAAGGAGATGCTGGAGCAGGACAGAGCGAGGTTGAAAACACTGAGTGATCAGATGAACAGCACACTGGAGGCCATTCTTCAGAAAAACAGCTTTCCAGCTCGACAGTACTGTCAGTCCAGTGAGGAGGGGCTCCAGTGTTCATCCTGTCCTCAAAACTGGATTCAGAATGGCTCCAGGTGTTACTTTTTCTCTACAGGAGATGACTGGAAAACCTGGGAACAGAGTCAGGAATACTGCTTGATGTATGGAGCTCAGCTGACCAACATCGACAACATTGAGAAACAGGCATTCATCAATCAGCACACCAAATATTATTTTGACAAATATCACGGCTACTGGATTGGCCTCtctgaaaaagcaaacaaatggATTTGGACCACTGGTGCCATACTTAATACAACGTTTTGGACTGGAAATCCCTACCCGGGTTACAAGTACTGTGTTCTCTCAATGCCCAGCAATAATCCACTGAAAAGCTGGACGTCAAATTCCTGTGGCATGAAAAGCAAATGGATCTGTGAAGTAGAAGCTTTTACTTGGCCAACCTTTCTTCAAACCCACCAAAACCAAAGTGACCCCTTAACATGAAAACCGGAAACTGAAGTTTTACAGCTTTTAAACATGACTCTATGTGAAAGCTTTGTCCTTGTTCTTTTGatagtaatatatatttataatgttgcatctttatattgttgtttgtgaaatgttttttttgttcaa
>TCONS_00021062
agagttgtgaggaatcagaggtgcatgcggctgcccacgggaaaaatttgccatcagcccaacacagtttggattatcataggactgtcagaggtttgccaaacctgtcaaatgcatgatggctcctgtttggacttaccgatgtcctcgacttcaagtatccatcaaaactgtatacatttgagatatattagagactctttttgggactggacattatgcatcctaaatcttcatcaaaatatgcaaatctcctcactgagttgccttggatgatttctcaataggatctgGGCTCCAGTGTTCATCCTGTCCTCAAAACTGGATTCAGAATGGCTCCAGGTGTTACTTTTTCTCTACAGGAGATGACTGGAAAACCTGGGAACAGAGTCAGGAATACTGCTTGATGTATGGAGCTCAGCTGACCAACATCGACAACATTGAGAAACAGGCATTCATCAATCAGCACACCAAATATTATTTTGACAAATATCACGGCTACTGGATTGGCCTCtctgaaaaagcaaacaaatggATTTGGACCACTGGTGCCATACTTAATACAACGTTTTGGACTGGAAATCCCTACCCGGGTTACAAGTACTGTGTTCTCTCAATGCCCAGCAATAATCCA

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0007507 heart development biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000094396

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021808 False 1267 lncRNA 0.41 8 29030682 29042101
TCONS_00021062 True 634 lncRNA 0.43 4 29030937 29035980

Neighbor

gene id symbol gene type direction distance location
XLOC_010766 si:dkey-222b8.1 coding downstream 152602 28861342 ~ 28878080 (-)
XLOC_010765 syt11b coding downstream 174570 28842414 ~ 28856112 (-)
XLOC_010764 plin6 coding downstream 194153 28797703 ~ 28836529 (-)
XLOC_010763 dcst1 coding downstream 302919 28711556 ~ 28727763 (-)
XLOC_010762 adam15 coding downstream 320808 28663184 ~ 28709874 (-)
XLOC_010768 mef2d coding upstream 30773 29072874 ~ 29194517 (-)
XLOC_010769 CR938717.1 coding upstream 113637 29155738 ~ 29155852 (-)
XLOC_010770 rhbg coding upstream 223695 29265796 ~ 29277164 (-)
XLOC_010771 bcan coding upstream 268044 29310145 ~ 29334672 (-)
XLOC_010772 isg20l2 coding upstream 324345 29366446 ~ 29375986 (-)
XLOC_010626 CR392024.2 misc downstream 8135507 20895112 ~ 20895175 (-)
XLOC_010756 NA non-coding downstream 1023746 27977966 ~ 28006936 (-)
XLOC_010752 NA non-coding downstream 1432005 27595562 ~ 27598677 (-)
XLOC_010748 NA non-coding downstream 1656816 27355418 ~ 27373866 (-)
XLOC_010741 BX511010.1 non-coding downstream 2278477 26747753 ~ 26752205 (-)
XLOC_010740 NA non-coding downstream 2298754 26719880 ~ 26731928 (-)
XLOC_010777 BX248517.1 non-coding upstream 473870 29515971 ~ 29530362 (-)
XLOC_010779 NA non-coding upstream 489247 29531348 ~ 29538953 (-)
XLOC_010781 NA non-coding upstream 605113 29647214 ~ 29650725 (-)
XLOC_010784 NA non-coding upstream 877494 29919595 ~ 29921770 (-)

Expression


Co-expression Network