CI01000082_00445788_00458726 (STAG1, STAG1A, STAG1B)


Basic Information

Item Value
gene id CI01000082_00445788_00458726
gene name STAG1, STAG1A, STAG1B
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 444474 ~ 458726 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000082_00445788_00458726.mRNA
ATGAAGGGAATTCCAGTGTGCATTCCTGTTGAACTTTATCCATATGTCTGCTTCACGGTTGCATACAAGCAGTTTGAATCCTCAGTATCCACTGAAACATCTATTACTACGGTGTGGAAAGTCTCCTCTGGGGATTCCCCTAGTTTTGTCAGAAGAGTCAACATGATCAACTCAGAATTTCCTGTATTGCAGGACTCGTCAAATGACGGGCAAGGCGACACCATGAGTCTGAGCATGAGCGTCAGTGAGCTGGACGACTCTGGGGAGGGAAAAGGCAAGAAAAAGAGAGGAAGGCCTGGAAAACAAGGAGTGGCCAATAAGAAGGCTCGAAGATCTCCGGTTGATAAAGGAGGGAGGAGGCCGAATGGAGTGGCCCATCAGAATGGAGAGGGGCCAGACCCCAGCACTCTGTTCGAGGTGGTCAAACAAGGCAAAAGTGCCATGCAGTCTGTCATTGATGACTGGATTGAATCTTACAAGCAAGACAGAGACCTTGCACTCCTAGATCTAATCAACTTTTTCATTCAGTGTTCTGGCTGTAAAGGTACTGTAAGGATCGAGATGTTCAGGAACATGCAGAATGCTGAAATTATCAGGAAGATGACAGAGGAATTTGATGAGCTCCAAGAAAATCAAGATGAGATTGAGAACATGATGAATTCGATCTTCAAGGGTATTTTTGTTCACCGTTACAGGGATGCCATTGCAGAGATTCGAGCTATTTGCATAGAGGAGATTGGAGTTTGGATGAAGTTATACAGTGATGCTTTTCTCAATGACAGTTACTTGAAGTATGTGGGCTGGACACTACACGACAGACAAGGTGAAGTTCGACTCAAATGTCTAAAGGCCCTTCAGACCCTTTACACCAACAGAGAGCTTTTCCCCAAGCTTGAGCTCTTCACCAATAGATTTAAGGACCGTATTGTATCCATGACGCTGGATAAAGAGTATGATGTGGCAGTAGAGGCCATACGACTTGTCACTTTGATTCTGCACGGTAGTGAGGATGCTTTGTCTAATGAAGACTGTGAGAACGTCTACCATCTAGTGTATTCGGCTCATCGGCCTGTTGCCGTGGCAGCTGGAGAGTTCCTTCACAGAAAATTGTTCAGCAGGCATGACCCTCAGGCTGAGGAGGCTTTGGCGAAGAGACGAGGTCGAAACAGCCCCAATGGGAACCTTATAAAAATGCTGGTGCTTTTCTTCCTTGAGAGCGAACTTCACGAGCATGCGGCATACCTGGTGGACAGTCTGTGGGACAGCTCGCAGGACCTGCTGAAAGACTGGGACTGCATGGTAGAGCTCCTGCTGGAGGACCCTGTGCAGGGGGAAGAGGTGTTGGGAGACCGGCATGAGAGCGCACTGATCGAGCTCATGGTCTGCACCATCAGGCAGGCAGCCGAAGCTCATCCGCCTGTGGGCAGAGGAACAGGAAAGAGGGTGCTCACTGCCAAGGAGAAGAAGACACAGATTGACGATAAGAATCGACTCACTGAGCACTTGATTGTTGCTCTGCCCATGCTACTTTCAAAGCATCTGGATGCCCTGCTGAAGCAGATCCGTGTGGTTGTGGAGAAGCACGCAGAGATGGATGTTCTGGAGGCGTGTAGCAAGACTTACAGCATCTTGTGCAGTGAAGAATACACCATCATGAATCGCGTAGACATCGCTCGCAGCCAACTCATTGACGAGCTCACGGACAGATTCGCTCACTCGGTGGAAGACCTGCTGCAGGAGGGCGATGAAGCAGATGACGATGACATTTATAATGTTCTTTCAACGCTAAAGAAGCTCACTGCTTTCCATAACGCACATGACCTTACAAAGTGGGACCTTTTCAAAAACTGCTATCGATTGTTGAAGATGGGGATCGAACAGGGCTCCATGCCAGAGCAGATCGCTGTCCAGGCTCTGCAGTGCTCTCATTACTCCATCCTGTGGCAGCTGGTGAAAATTACTGAAGGATTTCCATCAAAGGATGATCTTGTGGCATTAAGAAGAGTGGTCAAGTCTTTTCTAGCAGTTTGCCAACAGTGCCTGTCTAATGTGAACACTCCAGTCAAAGAGCAGGCCTTTATGTTGCTATGTGACCTCCTGATGATCTTCAGTCACCAATTGGTCAACGGTGGTCGAGACGCTCTGCAGCCACTGGTCTTCAATCCAGACAGCTCTCTGCAAAATGAACTGCTAAATTTTGTCCTGGATCATGTGTTTATCGACCAGGATGATGAAAATCAGAGCATGGAGGGTGACGAAGAGGATGAAGCCAATAAGATCGAGGCTCTTCACAAGAGGAGGAATCTGTTAGCCGCCTTCTGCAAACTTATCATCTACGACATTGTGGACATGCCTGCTGCTGCTGACATCTTCAAACAATACATGAAGTATTACAATGACTATGGAGACATCATCAAAGAAACCTTGAGTAAGACCAGACAGATGGACAAGATTCAGTGCGCAAAGACCCTTATCCTCAGCTTGCAGCAGCTCTTCAATGAGCTGATCCAGGACCAAGGACCCAACCTGGACCGAACGTCCTCCCATGTCAGCGGCATTAAGGAACTGGCCCGTCGCTTTGCACTCACGTTTGGGCTGGACCAAATCAAAACCAGAGAGGCCGTGGCCACACTGCACAAGGATGGGATTGAATTCGCTTTCAAGGTCCCGAATCCAAAAGGACCAGAATACCCACCACCAAATCTGGCCTTTCTGGAGGTTCTCTGTGAGTTCTCCTCCAAACTCCTACGACAGGACAAAAAGACTGTTGTTTTTGATTCTGATAAATGTGTTCATAGTCATTCCTATCTGGAGAAGTTTATGACGGAGTATATGATGGAGAGAAGAGAGGACGTCTGGCTGCCTCTCATCGCGTACAGGAACTCCCTGCTGACAGGAGGAGATGATGACCGGCGAGGCCTCATGGAAGATGACGCTGAGCCCATCTTCGAGGACGTGATGATGTCCTCGCGCGGTCAGCTAGAGGACATGAACGAGGAATTCGAAGATACCATGGTGATAGATCTGCCAGCGTCGAGAAACCGCAGAGAAAGAGCTGAACTCAGACCAGACTTTTTTGACTCTACGGCCATAATGGAAGATGATTCTGGATTCGGAATGCAGATGTTTTGAGAGAGATTTCAGCCTCTATGGGTGATCACAACCAGCAACCAACAAGAATCACATCTTAAATGTTTATTTTGTTTTTTAATAGCAGTTTCACACAACTGTACGCAAGCATGTAAGCTTCCTCTCTTAGTTCTGTGGTTGGCCATAATCCCATTGTGAGCCTTTCCTGTCAGTCAGCATTTCCTCAGTTCATAAGGACCAAGAGAGCCTGTAAAAGCTGTAATCTGCTGGTTTTACAATGGTGTTACGATTTCAGCAGCATCTCAGCAGTATCAGTTCCTATTTTTCATATCATCCATTGATTTCTTAGAGCAAATGTGGTTTAATCAGACATTGTTTGGACAGACGTTTTGTTACTCCACTGCTTTCTAGATATTTTAAGACTATCGTCCGTTCATGTTCTGGTTTTGTTCAGGGTGAAATTTAGAAAGGAACATGTTATGGTCGTGATCATTTTCTTTTCAAGTCTGTTCAGAAGTATTATTGGCCTTAAACATGTATTATTGCTTGAATTTGGTGTTAGATTACTTGATTTACCAGATTAATAATAGCAAAGCCCACGTTTGTTCAGAACAACTCTTTAAAATGAAAAATGTAAAAATATATGAGGATATTTGAGGAGGAAATACACCGAAGTATTCATTACTTCAGACACTGGTCATGTGTTTTATACAAACCTTTTGTTGAAGAACTTGTTTCTTCCCATTTTAAAGACATGTTTACCTCCTCTGTTTAGAGTCTGCTCAGTGATTTACCTTTTTTACTGTGCGTTTGTGGAAACATTGTAGCTTTCACACAATACTGTATTGCTGTGAACATTTATTGATCGTTTATTGGGCTTTTAGGTCCATCTGAATATCCACAGAGCAGGTTTTGATAACACCTGTGTGGTATTGACGAGTGATGTCAAAACCCTTGTTTAGACCGGTGCTTTTAGATACAGACTCCGATCAAACAGTGGGATTGTCATTTATTTTAACCTTTTCACTGTTAAAACTTTGCTTTTTTTAAAAAAAAAAAAATGTTTAAATAAAAGTATTTAAAAGTATTGTCAAGTATTTTCGAAAGAATTTTGTGAAACCTACCAAATTCTTGTCTAATACACATTAATTGTTGCTACATACAAGATTTGTTTTGAATTTTCTCAGACAATTTGGTACTAACATTCTGTGAGGCATATCTACATAAAAATGACGTTCTCTTCAATCTCCTCAAAATATGAAGAGAAGTTTTAGAGACGTAGGAAGGGAACAGTAAGGATTGTGTCAACAAACATTGGTTTTATTGGGAAACGGGCTTCCAGCCAACATAATTAAA
>TU334588
GCGAGGCCTCATGGAAGATGACGCTGAGCCCATCTTCGAGGACGTGATGATGTCCTCGCGCGGTCAGCTAGAGGACATGAACGAGGAATTCGAAGATACCATGGTGATAGATCTGCCAGCGTCGAGAAACCGCAGAGAAAGAGCTGAACTCAGACCAGACTTTTTTGACTCTACGGCCATAATGGAAGATGATTCTGGATTCGGAATGCAGATGTTTTGAGAGAGATTTCAGCCTCTATGGGTGATCACAACCAGCAACCAACAAGAATCACATCTTAAATGTTTATTTTGTTTTTTAATAGCAGTTTCACACAACTGTACGCAAGCATGTAAGCTTCCTCTCTTAGTTCTGTGGTTGGCCATAATCCCATTGTGAGCCTTTCCTGTCAGTCAGCATTTCCTCAGTTCATAAGGACCAAGAGAGCCTGTAAAAGCTGTAATCTGCTGGTTTTACAATGGTGTTACGATTTCAGCAGCATCTCAGCAGTATCAGTTCCTATTTTTCATATCATCCATTGATTTCTTAGAGCAAATGTGGTTTAATCAGACATTGTTTGGACAGACGTTTTGTTACTCCACTGCTTTCTAGATATTTTAAGACTATCGTCCGTTCATGTTCTGGTTTTGTTCAGGGTGAAATTTAGAAAGGAACATGTTATGGTCGTGATCATTTTCTTTTCAAGTCTGTTCAGAAGTATTATTGGCCTTAAACATGTATTATTGCTTGAATTTGGTGTTAGATTACTTGATTTACCAGATTAATAATAGCAAAGCCCACGTTTGTTCAGAACAACTCTTTAAAATGAAAAATGTAAAAATATATGAGGATATTTGAGGAGGAAATACACCGAAGTATTCATTACTTCAGACACTGGTCATGTGTTTTATACAAACCTTTTGTTGAAGAACTTGTTTCTTCCCATTTTAAAGACATGTTTACCTCCTCTGTTTAGAGTCTGCTCAGTGATTTACCTTTTTTACTGTGCGTTTGTGGAAACATTGTAGCTTTCACACAATACTGTATTGCTGTGAACATTTATTGATCGTTTATTGGGCTTTTAGGTCCATCTGAATATCCACAGAGCAGGTTTTGATAACACCTGTGTGGTATTGACGAGTGATGTCAAAACCCTTGTTTAGACCGGTGCTTTTAGATACAGACTCCGATCAAACAGTGGGATTGTCATTTA

Function

symbol description
stag1a Predicted to enable chromatin binding activity. Predicted to be involved in sister chromatid cohesion. Predicted to be part of cohesin complex. Predicted to be active in chromatin and nucleus. Human ortholog(s) of this gene implicated in autosomal dominant mental retardation 47. Orthologous to human STAG1 (stromal antigen 1).
stag1b Predicted to enable chromatin binding activity. Predicted to be involved in sister chromatid cohesion. Predicted to be part of cohesin complex. Predicted to be active in chromatin and nucleus. Human ortholog(s) of this gene implicated in autosomal dominant mental retardation 47. Orthologous to human STAG1 (stromal antigen 1).
stag1 Predicted to enable chromatin binding activity. Involved in mitotic spindle assembly. Located in chromatin; mitotic spindle pole; and nuclear lumen. Part of cohesin complex. Implicated in autosomal dominant mental retardation 47.

GO: NA

KEGG:

id description
K06671 STAG1_2, SCC3, IRR1; cohesin complex subunit SA-1/2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000082_00445788_00458726.mRNA False 4446 mRNA 0.44 29 444474 458726
TU334588 True 1190 lncRNA 0.39 3 444818 446354

Neighbor

gene id symbol gene type direction distance location
CI01000082_00439306_00442252 MSL2B coding downstream 1640 439159 ~ 442834 (-)
CI01000082_00393974_00398069 NA coding downstream 46098 393923 ~ 398376 (-)
CI01000082_00347180_00377462 FNDC3BB coding downstream 67012 345891 ~ 377462 (-)
CI01000082_00302837_00322352 PLD1B coding downstream 122122 302803 ~ 322352 (-)
CI01000082_00234503_00271440 TNIK.S, TNIK, TNIKB coding downstream 173034 234436 ~ 271440 (-)
CI01000082_00597462_00611609 ZMYND11 coding upstream 137593 596319 ~ 611625 (-)
CI01000082_00666387_00667509 NA coding upstream 207211 665937 ~ 667840 (-)
CI01000082_00678125_00678798 NA coding upstream 219384 677628 ~ 678839 (-)
CI01000082_00689066_00690051 NA coding upstream 229786 688512 ~ 690121 (-)
CI01000082_00691711_00692356 NA coding upstream 232917 691643 ~ 692356 (-)
G294715 NA non-coding downstream 28032 414802 ~ 416442 (-)
G294739 NA non-coding downstream 30704 413538 ~ 413770 (-)
G294737 NA non-coding downstream 32829 411420 ~ 411645 (-)
G294718 NA non-coding downstream 305272 138424 ~ 139202 (-)
CI01000082_00135087_00136976 MYEOV2.S, MYEOV2, COPS9 non-coding downstream 307446 134964 ~ 137769 (-)
G294792 NA non-coding upstream 94833 553559 ~ 568318 (-)
G294803 NA non-coding upstream 116490 575216 ~ 576931 (-)
G294804 NA non-coding upstream 119059 577785 ~ 579087 (-)
G294838 NA non-coding upstream 223729 682455 ~ 683048 (-)
CI01000082_00692849_00695595 NA non-coding upstream 235329 692771 ~ 695766 (-)
G294821 NA other upstream 211758 670484 ~ 671462 (-)

Expression


Co-expression Network