CI01000082_00597462_00611609 (ZMYND11)


Basic Information

Item Value
gene id CI01000082_00597462_00611609
gene name ZMYND11
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 596319 ~ 611625 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000082_00597462_00611609.mRNA
CTCTCAACTGTGGCCCGGCTCCTCCAACCAACCACAATTCTGACATTTAACTCCGGAAACACAAATGTAACCAGCGCTGCGTTACATCCTAAAGTGAGACTGAACGGCAAGGCGTTTGATCAGCTGTCGGACAGCGGTAAGTTGGAACTGGCCACAATGTCAAGGGTGGTTAAGAAGAGGCAAGCGGACCCCAAGGTGGTTCAATATGTCTGGTCGGCCATTGAAGTCATCCGCAATCAGAAACAAATCGCAAACATGGACAGAATCTCAAAATATTTAAGTCGTGTGTATGGGATGCACCCTAAAGACACGGCCAGGCAGCTGGTTCTGGCTGTGAAAGACGGTCTTGTGGTGGAGACGCTCACAGTGGGCTGCAAAGGCTCTAAAGCCGGAATCGAACAAGAGGGATACTGGCTCCCAGGAGACGAGATGGGCAGTAAAAGGAAGAATTTGAACAAACAGGAAATGACAACATACCTGAAGTTCATTCTTGGACGCATGAAGGAAAGGGCTGTGGACCTGCACAAGAGAGGCAAGGAGTCAAAGCAACCCGTGTACAGAAGACTGATCCACACACCTCTGGATGTGGAGAACATACAAGAGAACATCTCAGAGGGGAAGTACAAGAGCTTTGAGGAGTTCAGGGCTGACGCTCAGCTTATAGTTCACAACACAGCCATTCTGCACGGAGTCAACAGCGATCAGACTGAAATTGCGAGACTTCTCTACAACGACACATGCCATGAGAGTCCGAATCATGAGCTGGTTTGGGCCAGGATGAAGGGCTTTGGTTACTGGCCTGCCAAGGTGATGCAGAGGGAGGGCAGCCAGGTGGATGTTCGGTTCTTTGGTCACCAGCACCAAAGGGCATGGATTCCTTCTGACAACATCCAGGAGATCACGGTCAGTGTGCAGCAGCTGCAGGTGAAGCGCAGCTCGGGCTGGAAAAAGGCGTGTGATGAGCTGGAGCTTCACCAGCGGTTCCTGAGGGAGGGTCGTACCTGGAAGGGGAAGCCGGAGGAGAAGCATGACAGGTCGGAGAGGCACGAAAGACAAGAAGACAGACAGGAAGAGGCGGAGTCAAGCATCTCCTCCACATCCAACGAGCAGTCAAAAGGCAACCAAGAGCCCAAAGCTAAAAAGAGCCGCCGATCCCAAGTTGCCGAGCCCAAAGAAGAGGAACCAGAGCCCGAGATGGAAGCCGTCAGCTCCAGCCAAGAGATCCCAACAGCTGTTCCACATCAGCCCGAGCGTATGTCCGTCTCCACCCAGACCAAAAAGTCTGGCTCGCCTTCTTCCTCTTCCTCACCAGCCCCGCGCATGGTACACCGAGGCACACAGACGGTCAACGAGGGCAACTGCCAAAACATGTGCCATGACAAATACACCAAGATCTTCAGCGATGTTAAAGAAATGATGAAAGCGGAGAACAAGCGGGAGACTGAACGTGTCCTGAAAGAGGCTCTGGACAAGTTGCGAGGTGAGATGGAAGAGGAGAAAAGGCAGGCAGTGAACAAAGCAGTGTCCAGCACACAGGCCGAGATGGAGAGAAAGTGTAAACAGGTGAAGGAGAAGTGCAAAGAGGAGCTCATGGAGGAGATGAAGAAGATGGTAGCTCAGCATAAACAACTTATTTCCCAGACCAAGAAGAAGCAGTGGTGTTATAACTGTGAAGAAGAGGCGATGTACCACTGCTGCTGGAACACGTCGTACTGCTCCATCAAATGTCAGCAGGAGCACTGGCACGCCGATCACAAACGTACCTGCCGCCGGAAGAGATGAGCTGCCGCTGGCCACGCCCCTCCTCTCGACTCCACCCATCTACAAGCCACGCTATTGGATAGATCATGGATTCTTGATTTATAGCCAGGATTTTAAACCCCAGCTCCTTAGGACACTTACCTGGACATTTTACTGGGTTGCAGTGAATGCTAACAGGACAAGTGAGCATGGGATTTCACATATTCCTCGTAGAGATGGCTTTTATGTTTGGATTTTAACAGTATCTCTTTACATATCCCTTTTTTTTTACCCTTTTATTTGCTGTATGACGGAAATCAGCCTTGCTTGCATACAGACTAGCTGAAATGTGAAGTACTAGTAATCTTTTTAAACAACTTAATCTGAAGCTATGTAGATATTTGAATTTTTATATGAGCGAATCATGTCAGCCTCCTGCATTGAGTGAAGTTGGTGCTTTTAAAATCGACGGTTGGTTTTTATCAGTGATTGTGATGTGTCATTTTTGTTGGGAACAGGGTTTAAAGATGGCAGGTCATGTCTGTCTGAATGATACAATCTTCCATTAATGAATATGCACAGTTCATGGTTACACTTTTAAATAGGCCTTCTAATTTGTAGCGAAAAAACTAAATTATGTGCTAATTTTGGGGTCCATTTCTGTAGCTTAAGTGTACTAAATCTTTGCCAAGTGGGATCTTTAGTGAGGTTTATAAGCGTGGGCAAATTCGCTTGTACCAGACAGAATGAACAAAACCTGATGCTTTCATATGTCAAGATCCCATTAAATAGCAAAGTTTAATCAGATTTAAGATTGTACAGTGATCAGAGTAAATTAAACAATCAGAAATTATCGCTTTAGGGTTTTATCATGGAGAATGACTTTTCATGGCACTTTCTGACCTGAGGTAGAAGTTAAAAGAATAGTATACATAATTTAAATTCAACCACCATTTACTCACCCTCAAGTTGTTCCAAACCTCATGTGTGAAAGAAAATAGCTGAACTTGGTCTCCATCCATTTTCATTGTACGGAAAAGAGCAGCTCGAACACTCGGCTAAACATCTCCTTTTGTGTTTTTTGCAAGAAAGTCAGTCAAATGCCTATGGAATGACATGAGGCCGAGTAAATTACAAAATTTGAATTTTTAGGTGAATTGTTATCCTTTTAAATATTGCAATAAA

Function

symbol description
zmynd11 Predicted to enable metal ion binding activity. Acts upstream of or within negative regulation of BMP signaling pathway and pathway-restricted SMAD protein phosphorylation. Is expressed in gut; head; immature eye; nervous system; and trunk. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 30. Orthologous to human ZMYND11 (zinc finger MYND-type containing 11).

GO:

id name namespace
GO:0030514 negative regulation of BMP signaling pathway biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000082_00597462_00611609.mRNA False 2925 mRNA 0.46 13 596319 611609

Neighbor

gene id symbol gene type direction distance location
CI01000082_00445788_00458726 STAG1, STAG1A, STAG1B coding downstream 137593 444474 ~ 458726 (-)
CI01000082_00439306_00442252 MSL2B coding downstream 153485 439159 ~ 442834 (-)
CI01000082_00393974_00398069 NA coding downstream 197943 393923 ~ 398376 (-)
CI01000082_00347180_00377462 FNDC3BB coding downstream 218857 345891 ~ 377462 (-)
CI01000082_00302837_00322352 PLD1B coding downstream 273967 302803 ~ 322352 (-)
CI01000082_00666387_00667509 NA coding upstream 54328 665937 ~ 667840 (-)
CI01000082_00678125_00678798 NA coding upstream 66501 677628 ~ 678839 (-)
CI01000082_00689066_00690051 NA coding upstream 76903 688512 ~ 690121 (-)
CI01000082_00691711_00692356 NA coding upstream 80034 691643 ~ 692356 (-)
CI01000082_00692849_00695595 NA coding upstream 81162 692771 ~ 695766 (-)
G294804 NA non-coding downstream 17232 577785 ~ 579087 (-)
G294803 NA non-coding downstream 19388 575216 ~ 576931 (-)
G294792 NA non-coding downstream 28001 553559 ~ 568318 (-)
G294715 NA non-coding downstream 179877 414802 ~ 416442 (-)
G294838 NA non-coding upstream 70846 682455 ~ 683048 (-)
G294841 NA non-coding upstream 85649 697258 ~ 697524 (-)
G294842 NA non-coding upstream 86139 697748 ~ 697958 (-)
G294844 NA non-coding upstream 88033 699642 ~ 699866 (-)
G294821 NA other upstream 58875 670484 ~ 671462 (-)
G296906 NA other upstream 1791210 2402819 ~ 2433912 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location