XLOC_010776 (lingo4b)


Basic Information

Item Value
gene id XLOC_010776
gene name lingo4b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 29455974 ~ 29480335 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021081
CTGAGCACGAGGATGATGTTAGAGGACATTGTGCAGAAGTGAGAAACTGCGACTCGACATGGACAAGCGACTTGGAGagcaatgatgatgatgagatcGCTGCTGTCCAGATACTGTGAGGGAAGCCGGATTTTCAACATGTGATGTTTAAATGCATTTCCAACAAACACTGAGCCCATCATAGAGACCCACCTGAACAAAAATCTGGTTATGAGAACTGGCACAACAGAAGTCCCTTGGAAGGAGGTAAGATGTTCCTGGATTTGTGTGGTCAGCGGGGCGCATGGACCGTCCTGCTGCTGTGGTGCCTGAACTTGTCAGCTGCAGACCTCCCCTGCCCTCAGAGGTGCAGCTGCTCCCGAGACCCTCTGGAGGTCAACTGCTCTTCGAGACACCTGACTGCTGTGCCTGAGGGTTTACCCACCAATGCCAAACGCTTGGATCTTTCAGGAAACCAGCTGAAAACGCTGGCTAGGCGTCAGTTCTCCAGCCTGTCAAAGCTGGAGGACCTGGACTTGAGTGAGAACATAATCTCCATGATTGAGGTGGAAACATTTCAGGGTCTGAAGAACCTGCGATACTTGAGGATTAAGAACAACCGTCTCAAGATCCTGCCAGTCGGGGTTTTCTCCGGCCTCTCCAACCTTCGACGTCTGGATATCAGTGAGAATGAGATCCTGGTTTTCCTGGATTACACATTCAGGGATATGATTAACTTGCAGCAGCTGGACGCAGGGGAAAATGACCTGGTGTTTATCTCGCAGCGTGCGTTTGTTGGGCTTCAGGCACTGAAGGAGCTGAACGTGGACCGCAGCAATCTGACCTCCATCCCAACCGAAGCTCTGTCGCAACTTCAGAGCTTGACTAAGCTGCGTCTGCGCAAGCTCACTATTAGCGTGCTGCCCAACAATGCCTTTCGCCGACTGCACCAGCTGCGTACTTTGCAGATCCTCCACTGGAGTTCTCTCGAGATGCTGAACAGCAACAGCTTGGTCGGCCTGAACCTGACCACTTTAGTTTTAACCAACTGCAATCTTAGTGCCATACCTTACTCTCCCCTGCGCCATCTTGCCTACCTGCAGTACCTTGATCTATCCTACAACCCCATCACCTCCATACAGGGCAACCTTTTGGGGGATCTTCTGAGACTCCAAGAGTTGCACCTGGTGGGTGGAAACCTGCTACGGATAGAGCCAGGTGCCTTTAGGGGTCTGTCCCGCTTTCGCTTACTCAATGTGTCCTCAAATCGTCTGTCCACACTGGAAGAAAGCGCCTTTCACTCTGTGGGGAACCTGCAGACACTGCGGCTGGACAGAAACCCGTTGGCTTGTGACTGTAGGCTACTCTGGGTGATGCGACGGCGTCGGCGGCTGGATTTTGATGGCCGGCAACCCACTTGTTCACCCCTGAATCATCAGAGGAAGGCATTTCGGGACTTCTCAGAGGCAGAGCTTCCGGTTGTTTTTACGTGCAGACAGGCGCAGATCCTGAACCGACAGCTGCAGGATATAAGCGTGATTGAGGGAATGAGAGTACATTTTGACTGCAAAGCAGATGGCTATCCATCACCGTCTATAACCTGGCTGTCAGCCCAACAGTCTGCACTTAGCTCTGCCGGGAGAGTACGAGTGCTTACTAATGGGAGTTTACAGATCAGTTATGCGCAAGTACAAGACAGTGGAACATATTTATGTAGCGCAGCTAATGCTGCAGGTAATGACAGCATCTCTGTGAGTCTGCATGTGGAGGGGCTTCCACAAAACCGCACAGTGTCATATTTCTCAGACGAGGGATGGATAGAAACTTCAGCACCTCCATCTACCAACTCCTCAGCTCGGGTGTCAAGTCCTTACCCGTTTGATGCTAAAACCCTCATCATTGCTACCACCATGGGATTTCTGTCTTTTCTCAGCTCTGTTGCAATCTGTTTTGTGTTTATGTTCTTCTGGAGTCAGAGCAAAGGTCAGATAAAACACACTGCCACAATAGACTTTGTGCCACGATCATCTATGGGTGGAGGTGGAGATGGTGGAGACACCGGAAGATTCACAATGAAGCTTATTTGAGCTGGAATGGAGAATCCATGGTTTTTCTTACACATAGTTGAGCCTTTAAAACGGTTGTACactcttaaagtttttttttacagtgatgccATAGAAGAATCATTTAGGGTTCCATAAAGGACTTTCAGTGAATTGTTcttcacacaaagaacaaaatgTTCTTTTAAGAACTATGTAATAATATAAAGCACTGTTTTTTGTAACTGAAAAGAATATTTTGAGGAATGGAAAGGTTTTATGGATGTCAATGCCGaaaaagaacctttatttttgaaGGTTTACTGTAACTCTCAAAGTGCAGAAGAAACTTATCCATCACTCATTATTAATAGTTAAAAACTATGATTTCTTAGTGATGCTATTGTAGAACTATTTTTGTTCCCCAAATAACCTATCAGTGTATGGTTCTTAAAAGAACtcatttttaaatgtagaatCTAAAATGAATCTTATGGAATGAAATGATTCCTTCAATTTGAAaggttcttcatggaaccattgatgccaataaaaaactttttttttttgatgttgctGCTTGTCAACACAGCAAGGTACAAAGccttataacattttatttgcaaGCCAGAATGGCATTTTTGTAAATAAGTATAGTATGTTATCTTTATAAttctctcatttagattttttaagcctgaataatattaatgtaaatatacattGTAAGTTTACTTTATCACaataaaaaatgctattttagtGAAGAAATTAGGTTGGCactattatataaatttaaagtTAAGTAGATGATGCTATCAATTAAGTCTGAAGATAAACAAAAAGCAAATACTCCTAATATCCAAaggtaatattttatatttataaaaaatatgaatgatgtaAGTTAtatctaatatttaatttttaagggatagttcgcTCAAAATTTGCTAGGAATTTactgatgtacagttgaagtcagaattattaaaccccttgaatta
>TCONS_00021082
CCTTTCCTAAACTGTGTTTCTTGCATATGTTTATCTCATAGGAAGGAGGTAAGATGTTCCTGGATTTGTGTGGTCAGCGGGGCGCATGGACCGTCCTGCTGCTGTGGTGCCTGAACTTGTCAGCTGCAGACCTCCCCTGCCCTCAGAGGTGCAGCTGCTCCCGAGACCCTCTGGAGGTCAACTGCTCTTCGAGACACCTGACTGCTGTGCCTGAGGGTTTACCCACCAATGCCAAACGCTTGGATCTTTCAGGAAACCAGCTGAAAACGCTGGCTAGGCGTCAGTTCTCCAGCCTGTCAAAGCTGGAGGACCTGGACTTGAGTGAGAACATAATCTCCATGATTGAGGTGGAAACATTTCAGGGTCTGAAGAACCTGCGATACTTGAGGATTAAGAACAACCGTCTCAAGATCCTGCCAGTCGGGGTTTTCTCCGGCCTCTCCAACCTTCGACGTCTGGATATCAGTGAGAATGAGATCCTGGTTTTCCTGGATTACACATTCAGGGATATGATTAACTTGCAGCAGCTGGACGCAGGGGAAAATGACCTGGTGTTTATCTCGCAGCGTGCGTTTGTTGGGCTTCAGGCACTGAAGGAGCTGAACGTGGACCGCAGCAATCTGACCTCCATCCCAACCGAAGCTCTGTCGCAACTTCAGAGCTTGACTAAGCTGCGTCTGCGCAAGCTCACTATTAGCGTGCTGCCCAACAATGCCTTTCGCCGACTGCACCAGCTGCGTACTTTGCAGATCCTCCACTGGAGTTCTCTCGAGATGCTGAACAGCAACAGCTTGGTCGGCCTGAACCTGACCACTTTAGTTTTAACCAACTGCAATCTTAGTGCCATACCTTACTCTCCCCTGCGCCATCTTGCCTACCTGCAGTACCTTGATCTATCCTACAACCCCATCACCTCCATACAGGGCAACCTTTTGGGGGATCTTCTGAGACTCCAAGAGTTGCACCTGGTGGGTGGAAACCTGCTACGGATAGAGCCAGGTGCCTTTAGGGGTCTGTCCCGCTTTCGCTTACTCAATGTGTCCTCAAATCGTCTGTCCACACTGGAAGAAAGCGCCTTTCACTCTGTGGGGAACCTGCAGACACTGCGGCTGGACAGAAACCCGTTGGCTTGTGACTGTAGGCTACTCTGGGTGATGCGACGGCGTCGGCGGCTGGATTTTGATGGCCGGCAACCCACTTGTTCACCCCTGAATCATCAGAGGAAGGCATTTCGGGACTTCTCAGAGGCAGAGCTTCCGGTTGTTTTTACGTGCAGACAGGCGCAGATCCTGAACCGACAGCTGCAGGATATAAGCGTGATTGAGGGAATGAGAGTACATTTTGACTGCAAAGCAGATGGCTATCCATCACCGTCTATAACCTGGCTGTCAGCCCAACAGTCTGCACTTAGCTCTGCCGGGAGAGTACGAGTGCTTACTAATGGGAGTTTACAGATCAGTTATGCGCAAGTACAAGACAGTGGAACATATTTATGTAGCGCAGCTAATGCTGCAGGTAATGACAGCATCTCTGTGAGTCTGCATGTGGAGGGGCTTCCACAAAACCGCACAGTGTCATATTTCTCAGACGAGGGATGGATAGAAACTTCAGCACCTCCATCTACCAACTCCTCAGCTCGGGTGTCAAGTCCTTACCCGTTTGATGCTAAAACCCTCATCATTGCTACCACCATGGGATTTCTGTCTTTTCTCAGCTCTGTTGCAATCTGTTTTGTGTTTATGTTCTTCTGGAGTCAGAGCAAAGGTCAGATAAAACACACTGCCACAATAGACTTTGTGCCACGATCATCTATGGGTGGAGGTGGAGATGGTGGAGACACCGGAAGATTCACAATGAAGCTTATTTGAGCTGGAATGGAGAATCCATGG

Function

symbol description
lingo4b Predicted to enable epidermal growth factor receptor binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in Purkinje cell; cerebellum; granule cell; hindbrain; and optic tectum. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability and glaucoma. Orthologous to several human genes including LINGO1 (leucine rich repeat and Ig domain containing 1).

GO:

id name namespace
GO:0031012 extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005154 epidermal growth factor receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091214-3 Predicted to enable epidermal growth factor receptor binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in Purkinje cell; cerebellum; granule cell; hindbrain; and optic tectum. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability and glaucoma. Orthologous to several human genes including LINGO1 (leucine rich repeat and Ig domain containing 1).

Ensembl:

ensembl_id ENSDARG00000078527

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021081 False 3031 mRNA 0.43 3 29455974 29480335
TCONS_00021082 True 1889 mRNA 0.51 1 29456918 29458806

Neighbor

gene id symbol gene type direction distance location
XLOC_010775 si:ch211-113g11.6 coding downstream 3935 29407666 ~ 29452039 (-)
XLOC_010774 tlr18 coding downstream 50965 29387675 ~ 29405009 (-)
XLOC_010773 s100a1 coding downstream 68759 29385565 ~ 29387215 (-)
XLOC_010772 isg20l2 coding downstream 79988 29366446 ~ 29375986 (-)
XLOC_010771 bcan coding downstream 121302 29310145 ~ 29334672 (-)
XLOC_010777 BX248517.1 coding upstream 35636 29515971 ~ 29530362 (-)
XLOC_010778 onecutl coding upstream 41401 29521736 ~ 29528198 (-)
XLOC_010779 NA coding upstream 51013 29531348 ~ 29538953 (-)
XLOC_010780 hormad1 coding upstream 70688 29551023 ~ 29557338 (-)
XLOC_010781 NA coding upstream 166879 29647214 ~ 29650725 (-)
XLOC_010626 CR392024.2 misc downstream 8560799 20895112 ~ 20895175 (-)
XLOC_010769 CR938717.1 non-coding downstream 300122 29155738 ~ 29155852 (-)
XLOC_010767 NA non-coding downstream 413873 29030682 ~ 29042101 (-)
XLOC_010756 NA non-coding downstream 1449038 27977966 ~ 28006936 (-)
XLOC_010752 NA non-coding downstream 1857297 27595562 ~ 27598677 (-)
XLOC_010748 NA non-coding downstream 2082108 27355418 ~ 27373866 (-)
XLOC_010784 NA non-coding upstream 439260 29919595 ~ 29921770 (-)
XLOC_010787 NA non-coding upstream 1024181 30504516 ~ 30519239 (-)

Expression


Co-expression Network