XLOC_010778 (onecutl)


Basic Information

Item Value
gene id XLOC_010778
gene name onecutl
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 29521736 ~ 29528198 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021084
TTTTTGACACGGTTGTAGCATAGCGAAGTCTGGACATCGGACAGAATCGTACGGCCTTAGGCGTCCGTCATTTGTGTTGCATCCTCGACAGTTGTGGTCCAGCGAGAATCTACAGCGGATAACGCCAGCGACGGACCGGACCTAGCCGTTGCCTTATCTGAACAccgaaatgtgctgaagaaacaCAAAAGTCGCAACCGATTGTTGTGTGGTTGTAAATTCGGGATTTCTGCAGGTGTAAAGAGTATCCGATCCCGTTATCGGCTTTTGATTGTGTTTTGGAGTGGCTGTTTCGCTTCTCTCCATCCAGCGGGATAAGCTACGTCGTGAGCATTGTTCAAGATATGCATGGATAAACACAGGTGCATTTATGGAACACAGAATTTGCTTGCATGACCCAAGATGGTGCCACTGTGATGAAATGTCTCAGAGAGTACACTGAAATCAGATTTTGAGATATAAACAGCACTGGGAACTGTTTTTAGATCGCATTACAGAAACCACACTTTAGActgtgaaaacaaacaaacaaaaacaaatcagctGGAATTTGAAGAAGTGGTGGAGGAAGGTAAAGATATGGATGGTAATATGGGAGAGATGTCTGTGCACAGCCACGTAGAGCTGGCACACAGTCAGGAGAGCCGAGCCATGCTGCACTCTCGGGATCTCACGGCTGCCTTCCCTCGCCCCTCTCTGGGAGGCCCTGTCATGGGCCTGGAGTCTGACCACCAGAGCCCGACATATGACCACATGGCAACTCTGGGGTACAGCAGGGATGCACCAACTACCTGTGGAAGCACCTACACCACACTGACACCCCTCCAGCCATTTGATGACAAATTccaccatcatcaccatcatcccTGCCTGCCCGTCAGCAATGTCATCGGCAGCTTCACTCTCATGCGAGAGGATCGAAGTCTTGGAGGAAATTACTACACATCATACGGAAAAGATTTTGGTTTGGGACAAGGCCTGTCTCCACCGCTGGGCAGTGCAGGTTTGGATACTGCCATGCATGGCTATGGTACACTAGGAAGTCAGAATGGACACAGTAGCCAGATGCTACCAGGTGGCCATGAGGTCCATATGGGCAGCAACGGTAGTAACATCTGTCGAACAGTGCCAGACTTTGTGAGAGAGATGTCACCGCCCTCTCTGGGGGCTGAGCATGGGGTCAGCCACCAGCTAAACAAAATGGATGCCCATCAGCACACTCCCACCTACCACCATCATTTATACAACCAAAGTTATCAGCACCACCTTCCCAGCCAACAGGCCTCCAAGCTTGGGGAGCTGCCCTCTTCTTCCCCTTCCTCCTCTGGCTCCAGCCTGGGAAGGGAGGGCATGCTTGCTGGCTCGCAGAACGGCAGTGGAGGGGAGGAGATCAACACCAAAGATGTTGCTCAGAGAATCATCACTGAGCTGAAGCGGTACAGCATCCCACAGGCCATTTTTGCAGAGCGAGTTCTGTGCAGGTCTCAGGGCACTCTGTCAGACCTGCTCAGGAACCCCAAACCTTGGGGGAAACTCAAGTCTGGCCGTGAAACCTTCAAGAGGATGTCCCGCTGGCTACAGGAGCCAGAGTTTCAAAGGATGGCCTCATTACGACTGGAAGCTTGTAAGCGTAAGGAACAGGAGCAGTCCAAGGTGGAACGCAACCAGGGGCCCAAGCGCACTAGGCTAGTCTTCACAGATCTGCAGCGTCGCACACTGATGGCCATTTTTAGAGAGAACCACAGACCAACTAAAGACCTCCAGATCACCATCTCTCAGCAGCTGGGCCTTGAGCTTTCCACTGTAAGCAACTTCTTCATGAACGCTCGTCGCAGAAACCTCAACCGATGGGCCGAAGAGGGTCGTCCATCGTCCACCGGCTCATCGGGCTCCAGCACCGCATCTCCAGCTGTGACCTGCTCCACGGCATGATGGGAAAATGAGCCGTTTTCTGCTCTGCACAGCACAGGTTAAGCTGCAGCTCCTAGTGTTTGAGATTTTTAATCAAAAGTGTTTTTGTATACAAATCAACAGCATATGAAACCAAAGATGAAGTCTTTACGAGGGTGATGTCCACAATGTCTAGACGAGACAGAATTTGATTGTAGTTTTAGCATCGATTACTTTAGCTTTAATCGTGAAGGATGAGCCCACCACACCGGGGCTTATGAAATCATTCACAAATCAAGCGTTATGAAAAGGTATTGAATAGATATGAAATCggtttattttgtaatttgttacagcATATGAAATCACTGCAAGGTTTAATCAGTGCTGAAAAATGATATTTTTAGGGTTCTCAAAAGACATGATTTTGCAACAAATGGATAAATATTGACCAAAGAAACAAAGAAGGATGCAAACGAATCTTTCACAGATACTTTTAAAGGGGAAAACTACTGGACAAAGAAGCTGAAACCAAAATGTGAACATTTTTCGAGAGCTTGTTTTTTTATACTCTTTCATTTTAAAAGCCAGGCCTCATTGTCCAAGAAGAAAAGCCTCTGCTGTAGGACAGCTACAGCCTTGGTACAAGACAGAGTTGCATCCTCAGACAATATGAGGGCAAACAAGACGTGGAGAAGCAGGAAGAGCAGCTGTGACACTTTTTGCAAAAGACTTCTCGATGAGTTCTTTTTGACAGGCCACTCTCTTCTTGTGCATAATTTCCATCTGATTTTGAAAATTTCTAAGATGTCACTCTGAGGATgaagaattgtattttttttttgtacaaatttcaaGCACACAATCTGGCCCGATGGCTGTTCGTACTGGAAAAAAGCTCAAAATCTCGAAAACCCTGATGGAAAGTACTCACAAAAGCTTGAATTGAATATGAACTGGGAACCACtttgtgtatttataattatttatgtatttatttccaATCTTctagctatttattttatttatttgatagttACCGTCAGTATTTATTTCACcaagtgttgtttgtgtgtgaaaaatgACCCTGTCTCTGATAGGAGTCCCAATACCAAAGATGAATATTTGTCCTCCCTGAATGTCTAACGTTTCTCATCTACTCAACGCTGTGTTCGTATCTTGATAGCTGGGCTAGCATATTCATCCATGTTCATCGTTCACATGTGCTGCATGTCTAGACCCTTTAGGCCACAGCCTAACCAAACAGATCGAGACTCAGCATGAGACGGCACACAAGTGGCTGTGAAGTCAAGATGACTCTATATTTAGGCTGTTGAACTGTGATCTCCTCAGTGCAGTCCACATTTACTGTACGACGATCATACATAATGCGCCGTGGTCTCTCGGGGTGGGCCGTCGAGGGAGTGATCGTCCCTTTTCCAATGCTCTTTCTCGTTCCCCTG
>TCONS_00021085
TTTGAAGAAGTGGTGGAGGAAGGTAAAGATATGGATGGTAATATGGGAGAGATGTCTGTGCACAGCCACGTAGAGCTGGCACACAGTCAGGAGAGCCGAGCCATGCTGCACTCTCGGGATCTCACGGCTGCCTTCCCTCGCCCCTCTCTGGGAGGCCCTGTCATGGGCCTGGAGTCTGACCACCAGAGCCCGACATATGACCACATGGCAACTCTGGGGTACAGCAGGGATGCACCAACTACCTGTGGAAGCACCTACACCACACTGACACCCCTCCAGCCATTTGATGACAAATTccaccatcatcaccatcatcccTGCCTGCCCGTCAGCAATGTCATCGGCAGCTTCACTCTCATGCGAGAGGATCGAAGTCTTGGAGGAAATTACTACACATCATACGGAAAAGATTTTGGTTTGGGACAAGGCCTGTCTCCACCGCTGGGCAGTGCAGGTTTGGATACTGCCATGCATGGCTATGGTACACTAGGAAGTCAGAATGGACACAGTAGCCAGATGCTACCAGGTGGCCATGAGGTCCATATGGGCAGCAACGGTAGTAACATCTGTCGAACAGTGCCAGACTTTGTGAGAGAGATGTCACCGCCCTCTCTGGGGGCTGAGCATGGGGTCAGCCACCAGCTAAACAAAATGGATGCCCATCAGCACACTCCCACCTACCACCATCATTTATACAACCAAAGTTATCAGCACCACCTTCCCAGCCAACAGGCCTCCAAGCTTGGGGAGCTGCCCTCTTCTTCCCCTTCCTCCTCTGGCTCCAGCCTGGGAAGGGAGGGCATGCTTGCTGGCTCGCAGAACGGCAGTGGAGGGGAGGAGATCAACACCAAAGATGTTGCTCAGAGAATCATCACTGAGCTGAAGCGGTACAGCATCCCACAGGCCATTTTTGCAGAGCGAGTTCTGTGCAGGTCTCAGGGCACTCTGTCAGACCTGCTCAGGAACCCCAAACCTTGGGGGAAACTCAAGTCTGGCCGTGAAACCTTCAAGAGGATGTCCCGCTGGCTACAGGAGCCAGAGTTTCAAAGGATGGCCTCATTACGACTGGAAGCTTGTAAGCGTAAGGAACAGGAGCAGTCCAAGGTGGAACGCAACCAGGGGCCCAAGCGCACTAGGCTAGTCTTCACAGATCTGCAGCGTCGCACACTGATGGCCATTTTTAGAGAGAACCACAGACCAACTAAAGACCTCCAGATCACCATCTCTCAGCAGCTGGGCCTTGAGCTTTCCACTGTAAGCAACTTCTTCATGAACGCTCGTCGCAGAAACCTCAACCGATGGGCCGAAGAGGGTCGTCCATCGTCCACCGGCTCATCGGGCTCCAGCACCGCATCTCCAGCTGTGACCTGCTCCACGGCATGATGGGAAAATGAGCCGTTTTCTGCTC

Function

symbol description
onecutl Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in nervous system; neural plate; neural rod; and neural tube. Orthologous to human ONECUT1 (one cut homeobox 1).

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-020531-1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in nervous system; neural plate; neural rod; and neural tube. Orthologous to human ONECUT1 (one cut homeobox 1).

Ensembl:

ensembl_id ENSDARG00000040253

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021084 False 3353 mRNA 0.47 3 29521736 29528198
TCONS_00021085 True 1408 mRNA 0.55 2 29523132 29527412

Neighbor

gene id symbol gene type direction distance location
XLOC_010776 lingo4b coding downstream 41401 29455974 ~ 29480335 (-)
XLOC_010775 si:ch211-113g11.6 coding downstream 69697 29407666 ~ 29452039 (-)
XLOC_010774 tlr18 coding downstream 116727 29387675 ~ 29405009 (-)
XLOC_010773 s100a1 coding downstream 134521 29385565 ~ 29387215 (-)
XLOC_010772 isg20l2 coding downstream 145750 29366446 ~ 29375986 (-)
XLOC_010779 NA coding upstream 3150 29531348 ~ 29538953 (-)
XLOC_010780 hormad1 coding upstream 22825 29551023 ~ 29557338 (-)
XLOC_010781 NA coding upstream 119016 29647214 ~ 29650725 (-)
XLOC_010782 scnm1 coding upstream 157359 29685557 ~ 29690212 (-)
XLOC_010783 tnfaip8l2b coding upstream 170367 29698565 ~ 29714540 (-)
XLOC_010626 CR392024.2 misc downstream 8626561 20895112 ~ 20895175 (-)
XLOC_010769 CR938717.1 non-coding downstream 365884 29155738 ~ 29155852 (-)
XLOC_010767 NA non-coding downstream 479635 29030682 ~ 29042101 (-)
XLOC_010756 NA non-coding downstream 1514800 27977966 ~ 28006936 (-)
XLOC_010752 NA non-coding downstream 1923059 27595562 ~ 27598677 (-)
XLOC_010748 NA non-coding downstream 2147870 27355418 ~ 27373866 (-)
XLOC_010784 NA non-coding upstream 391397 29919595 ~ 29921770 (-)
XLOC_010787 NA non-coding upstream 976318 30504516 ~ 30519239 (-)
XLOC_010791 BX005347.1 non-coding upstream 1120189 30648387 ~ 30648504 (-)

Expression


Co-expression Network