XLOC_010780 (hormad1)


Basic Information

Item Value
gene id XLOC_010780
gene name hormad1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 29551023 ~ 29557338 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021086
TGCAGTTGAACGCTGGATGGCGTACAAGAGTGGCAGTTAGGCAGTCGGTTGCAATGAGGTCTTCAGATTTGTTTTAAATCACCTTAAAGCTTATGTTTGTCTCTCTGTTACATTTAAACTCTCAGTCAAATTCATTGATAATCGTTATTGTCAATTTTATCAGCTCATCATTTTTGGATTTTGACTGATCATCTGTCTCAATCATTATGACTTGTGAACAGAAATCGCGTCCTGTGCAGAGCTGTCAGATGCTACCAGACGTGGTGTCCAATGAACAGCAATCTCTGGTACTTGTGAAGAAACTTCTAGCCATTGCCATCTCCAGCATCACTTACCTCAGGGGTCTTTTCTCAGAAAAGGCCTATGGACGCAAATACGTTGGAGAACTGAAAGTCTATATTCTGCGAGAAGATAGCTGTCCTGGTGCTCAGCAGATTGTCCACTGGTTGCAGGGATGTTTTGATGCACTTCAAAGAAGATATCTGCGCATGGTTCTTCTGTCAATTTACTGTGATCCAGACAATCCACAGAAAGTGACTGAATGTTACCAGTTTAAAATCAAGTACACAGAGAAAGGACCTCAGATGGACTTTGAGAGCAAAAATGGACAGAGCCTGACTAAAATGGCCTGCGACAACACCCAGAAATCCAGTATGCTGCTTGTGCGCAAACTATACATGCTGATGCAAAATCTCGGCCCCCTGCCTGACGACGTCTGCCTTAACATGAAACTCTTGTACTATGATGAGGTGACCCCTCAGGAGTATCAGCCACCTGGCTTTAAGGAGGATGACAACGGGACGCTGATGTTTGAGAGAGAACCAGTAAACCTGACCATGGGAGAGGTGGTGACACCTTTTCACAGCATCAAAATGAACGTCACCACTGAGAAAAAGAGAATTGAACCTTTTGAAGATGATGTGGAAGTATGTGTGAGTACAAAATGGTCTTTGAAAATATCAGAGGATGGGATGATGTCTGAGACTTCAGTTCAGCAGGAGTGTATGACAAAGGAGAATGTCATCACTGATGCTGGTATTGAATACTCAGAAACTCAGGAAACTCAGGAGCAGCCTCACAGACACACCAAGGAGGATTTTTCAACAAATCCAAAGATGGACAATCTGGTAAAGAAAACTGCTGATCTGAAGGTGGATGCCAGAAAGACCAGGAGTGGACGGATCTTTGAGCCTCAGatctctcagcTAGAGTTCCCACTAAGCCAAGATCCCCAACCATCTGTCCCAAAGAGGCGCAAAGTCAGTGTACCCAAGTAACATTGTTAACATTGTGACTAGTGCACAAAAAATTCTTCTAGCACACTTACACTGCAACTTAGTAGCATGTGCCATTTGATATGTTTTGACTCGATTCGGTTGCAAAAATGCATTGTTATACAGGGTTTATGTTTTAAATGCATACAATAACATTAACAATAACAAGTATTTACTGTCTTTTTTGCAGTTAGGTATTTATTTTAGAGTTTTATCAGATAAGTTTGAATTgtcatatattaataaatgtttgtagcACTGCCAAATGTTAGTCTCTGCATTTACCATGTAGAGATTTAATACGTCCACTAGATGGCAGCATGCACATTGCCTTGGTTGATATTTAAACTGTTTATtccaataaaacaatacaatgtTTTCAGTAGAGAA

Function

symbol description
hormad1 Predicted to be involved in several processes, including gamete generation; meiotic chromosome segregation; and regulation of cell cycle process. Predicted to act upstream of or within cell differentiation and meiotic cell cycle. Predicted to be located in chromosome and nucleus. Orthologous to several human genes including HORMAD1 (HORMA domain containing 1).

GO:

id name namespace
GO:0048477 oogenesis biological_process
GO:0060629 regulation of homologous chromosome segregation biological_process
GO:0030154 cell differentiation biological_process
GO:0042138 meiotic DNA double-strand break formation biological_process
GO:0051177 meiotic sister chromatid cohesion biological_process
GO:0007283 spermatogenesis biological_process
GO:0051598 meiotic recombination checkpoint biological_process
GO:0051321 meiotic cell cycle biological_process
GO:0007130 synaptonemal complex assembly biological_process
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-49 Predicted to be involved in several processes, including gamete generation; meiotic chromosome segregation; and regulation of cell cycle process. Predicted to act upstream of or within cell differentiation and meiotic cell cycle. Predicted to be located in chromosome and nucleus. Orthologous to several human genes including HORMAD1 (HORMA domain containing 1).

Ensembl:

ensembl_id ENSDARG00000040254

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021086 True 1664 mRNA 0.41 15 29551023 29557338

Neighbor

gene id symbol gene type direction distance location
XLOC_010779 NA coding downstream 12070 29531348 ~ 29538953 (-)
XLOC_010777 BX248517.1 coding downstream 20661 29515971 ~ 29530362 (-)
XLOC_010778 onecutl coding downstream 22825 29521736 ~ 29528198 (-)
XLOC_010776 lingo4b coding downstream 70688 29455974 ~ 29480335 (-)
XLOC_010775 si:ch211-113g11.6 coding downstream 98984 29407666 ~ 29452039 (-)
XLOC_010781 NA coding upstream 89876 29647214 ~ 29650725 (-)
XLOC_010782 scnm1 coding upstream 128219 29685557 ~ 29690212 (-)
XLOC_010783 tnfaip8l2b coding upstream 141227 29698565 ~ 29714540 (-)
XLOC_010784 NA coding upstream 362257 29919595 ~ 29921770 (-)
XLOC_010785 cct3 coding upstream 851359 30408697 ~ 30421275 (-)
XLOC_010626 CR392024.2 misc downstream 8655848 20895112 ~ 20895175 (-)
XLOC_010769 CR938717.1 non-coding downstream 395171 29155738 ~ 29155852 (-)
XLOC_010767 NA non-coding downstream 508922 29030682 ~ 29042101 (-)
XLOC_010756 NA non-coding downstream 1544087 27977966 ~ 28006936 (-)
XLOC_010787 NA non-coding upstream 947178 30504516 ~ 30519239 (-)
XLOC_010791 BX005347.1 non-coding upstream 1091049 30648387 ~ 30648504 (-)
XLOC_010798 NA non-coding upstream 1609648 31166986 ~ 31169382 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_08016916_08025375 NA coding CI01000027 null 8016529 ~ 8025455 (-)