CI01000082_02639529_02641582


Basic Information

Item Value
gene id CI01000082_02639529_02641582
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 2638271 ~ 2641851 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000082_02639529_02641582.mRNA
GTGGCGCTGGAAGGATGACAGTCTTGCTCCCGAAGACATGTCCAATATAATCCGGATCCACAATCGTAACAACGATCAAGCCTGGCAGGAAATCCTGAAGTGGGAAGCCCTTCATGCAAGCGAGTGTCCATGCGGTCCATCTCTGAAGAGATTCGGGGGCAAAGCCAAAGAGTTTTCACCCAGAGCCAGAATACGTCACTGGATGGGATATGAATTACCTTTCGACCGACATGATTGGATCGTAGATCGGTGTGGAAAGGAAGTCCGCTATGTCATTGACTACTACGACGGGGACATTGATAAAGACACCTACCAGTTCTCCATCCTGGACGTGCGTCCGGCCATCGATTCTATGGGGGCCGTCTGGGATCGGATGAGGGTGGCCTGGTGGCGCTGGACATCGTAGAATCCATCCTAACACAGTTTTATAATTTCTGCACCACTATGAGACATTGGTACCAATATACTAGAATCTGGGTTCTACATGCTGTGAGACTGGTTCTGACTTTAACACGAATCCTTGCAAATTATTGCACATTGAGGAACTTACAGGTTCTCTGTTGGAGAGCAAAATGAGTCAGTGTTTTTTTTTCTGCTGATGAGGTTCTGAATTCATCATCGGCAAGCATCTCTTCTACTTTTTGAGTGATGGTTATGAAATTGAAAGCTCGCTATCTGATCTCACTTACAGGTTAAGCATATCCGCTGGTTTTTCTCTTTCAAAGGCTGATTATTGAGTGTTTTAGGTAATGTGTAGAGCGACTGGCAGCTGTTAGCATTTTTTAGCTCGGTGAAACGGTTTGGTGGTCTTTGCTAATGAATGTAATTGATCTGATAAAGCATATAAAATTGTGGCTTTTTTATTAAA
>TU337114
TGTCAGGAGTGTGCCTATGATTCCTTAAAATGCTGCCTAGGTAGGCAGCACACTAAGTTTTGGTAAAGAGCTATTATTTTAGATACTTTACAGACAAGACATGCTTATGTTTTGCACATTAAGGAAAGAAAATCAAAAAAAGAAAGTCTTTTTTGTCATGAATTACTGTAAATAGCTAATTGCTATTTGTTGTTTGCTAGGTGGCGCTGGAAGGATGACAGTCTTGCTCCCGAAGACATGTCCAATATAATCCGGATCCACAATCGTAACAACGATCAAGCCTGGCAGGAAATCCTGAAGTGGGAAGCCCTTCATGCAAGCGAGTGTCCATGCGGTCCATCTCTGAAGAGATTCGGGGGCAAAGCCAAAGAGTTTTCACCCAGAGCCAGAATACGTCACTGGATGGGATATGAATTACCTTTCGACCGACATGATTGGATCGTAGATCGGTGTGGAAAGGAAGTCCGCTATGTCATTGACTACTACGACGGGGACATTGATAAAGACACCTACCAGTTCTCCATCCTGGACGTGCGTCCGGCCATCGATTCTATGGGGGCCGTCTGGGATCGGATGAGGGTGGCCTGGTGGCGCTGGACATCGTAGAATCCATCCTAACACAGTTTTATAATTTCTGCACCACTATGAGACATTGGTACCAATATACTAGAATCTGGGTTCTACATGCTGTGAGACTGGTTCTGACTTTAACACGAATCCTTGCAAATTATTGCACATTGAGGAACTTACAGGTTCTCTGTTGGAGAGCAAAATGAGTCAGTGTTTTTTTTTCTGCTGATGAGGTTCTGAATTCATCATCGGCAAGCATCTCTTCTACTTTTTGAGTGATGGTTATGAAATTGAAAGCTCGCTATCTGATCTCACTTACAGGTTAAGCATATCCGCTGGTTTTTCTCTTTCAAAGGCTGATTATTGAGTGTTTTAGGTAATGTGTAGAGCGACTGGCAGCTGTTAGCATTTTTTAGCTCGGTGAAACGGTTTGGTGGTCTTTGCTAATGAATGTAATTGATCTGATAAAGCATATAAAATTGTGGCTTTTTTATTAAAAGCCCTTGTTCAGCTCTTCTATATTCATCCTGCTGTCAGGTTGAGTTTTAAAATGTTGTAATTTGTCATACCCGCTGTTTTGGGTTTATTTATTTTGAGCAAACTGCTTCATTATTGTCTGTGTGTGGATGCTAATATGTTGCTGACTGTGTTCTCTTTGAGTGTTTCTGAAAACAATTTCTCTAATTAAATACAATTTGTAACCCACTTCTTTTGTTTTAAATCTGACCTGTACCAAATTACAATTCAAAAAGTAAATCAACAGTGCTCAAGTACACGTTTCCTGTAGTTTTGCTTGGCTGTCAGCTTTTTACTTTTGCCACTTTCCAGATCACTCCAGCAGGTGGTGCCCTTTCCTCAGAAAATGTCATTTCTTTCATTATTGTTCATAGGTGATGGTGATTGATAGTGATCATTTCCACTGTCACCTAAGCCTTTATGTTTTACCATCATCATAACCAGTTAAGGATAAAATTTAACATGTTTTTTTATTTTATTTTTATTTTTTTAGGTTCCTATGAAATAGTCATGAACCATTGGTTTGTTTGTGGAGTTCACTGAAATTTTGGTCAGTCAGCTTAGCACTTGCAGACTAAATAGGGTGTCCATTTTAAAGGTGCACCATTAGCCCTTTTAGTATTTTGACATTCATCTGTGGAATAGGCTGTTTTTACAATACCATGGGTGATCGAAAACATTTGCTTCTGTGTGATTTTCAATCCAATAGGCATTAGTATGAAATCATATCAGCCATTGAAACAAACCTTAAAGTGATAGTTCACCCAAAAATAAAAAT
>TU337115
TGCTACTCTATATTTGGTCAAATTCTGTGTCTTGTAATTTTTTGCTTACTGTTTTTGGAACAGCCTCAATGTCAGGAGTGTGCCTATGATTCCTTAAAATGCTGCCTAGGTAGGCAGCACACTAAGTTTTGGTAAAGAGCTATTATTTTAGATACTTTACAGACAAGACATGCTTATGTTTTGCACATTAAGGAAAGAAAATCAAAAAAAGAAAGTCTTTTTTGTCATGAATTACTGTAAATAGCTAATTGCTATTTGTTGTTTGCTAGGTGGCGCTGGAAGGATGACAGTCTTGCTCCCGAAGACATGTCCAATATAATCCGGATCCACAATCGTAACAACGATCAAGCCTGGCAGGAAATCCTGAAGTGGGAAGCCCTTCATGCAAGCGAGTGTCCATGCGGTCCATCTCTGAAGAGATTCGGGGGCAAAGCCAAAGAGTTTTCACCCAGAGCCAGAATACGTCACTGGATGGGATATGAATTACCTTTCGACCGACATGATTGGATCGTAGATCGGTGTGGAAAGGAAGTCCGCTATGTCATTGACTACTACGACGGGGACATTGATAAAGACACCTACCAGTTCTCCATCCTGGACGTGCGTCCGGCCATCGATTCTATGGGGGCCGTCTGGGATCGGATGAGGGTGGCCTGGTGGCGCTGGACATCGTAGAATCCATCCTAACACAGTTTTATAATTTCTGCACCACTATGAGACATTGGTACCAATATACTAGAATCTGGGTTCTACATGCTGTGAGACTGGTTCTGACTTTAACACGAATCCTTGCAAATTATTGCACATTGAGGAACTTACAGGTTCTCTGTTGGAGAGCAAAATGAGTCAGTGTTTTTTTTTCTGCTGATGAGGTTCTGAATTCATCATCGGCAAGCATCTCTTCTACTTTTTGAGTGATGGTTATGAAATTGAAAGCTCGCTATCTGATCTCACTTACAGGTTAAGCATATCCGCTGGTTTTTCTCTTTCAAAGGCTGATTATTGAGTGTTTTAGGTAATGTGTAGAGCGACTGGCAGCTGTTAGCATTTTTTAGCTCGGTGAAACGGTTTGGTGGTCTTTGCTAATGAATGTAATTGATCTGATAAAGCATATAAAATTGTGGCTTTTTTATTAAAAGCCCTTGTTCAGCTCTTCTATATTCATCCTGCTGTCAGGTTGAGTTTTAAAATGTTGTAATTTGTCATACCCGCTGTTTTGGGTTTATTTATTTTGAGCAAACTGCTTCATTATTGTCTGTGTGTGGATGCTAATATGTTGCTGACTGTGTTCTCTTTGAGTGTTTCTGAAAACAATTTCTCTAATTAAATACAATTTGTAACCCACTTCTTTTGTTTTAAATCTGACCTGTACCAAATTACAATTCAAAAAGTAAATCAACAGTGC

Function

GO: NA

KEGG:

id description
K01764 HCCS; cytochrome c heme-lyase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000082_02639529_02641582.mRNA False 868 mRNA 0.44 3 2639067 2641582
TU337114 False 1864 TUCP 0.39 3 2638271 2641782
TU337115 True 1405 TUCP 0.40 3 2638799 2641851

Neighbor

gene id symbol gene type direction distance location
CI01000082_02499101_02514104 PTBP2, PTBP2A coding downstream 124963 2498606 ~ 2514104 (-)
CI01000082_02449770_02454344 NA coding downstream 183521 2449743 ~ 2455546 (-)
CI01000082_02295379_02298949 NA coding downstream 339743 2295142 ~ 2299324 (-)
CI01000082_02175270_02187098 SNX7 coding downstream 450901 2175227 ~ 2188166 (-)
CI01000082_02172392_02173323 NA coding downstream 465485 2172378 ~ 2173582 (-)
CI01000082_02648283_02668024 TMEM56, TMEM56A coding upstream 5206 2646788 ~ 2668024 (-)
CI01000082_02686245_02689228 CNN3B, CNN3A, CNN3 coding upstream 43794 2685376 ~ 2689228 (-)
CI01000082_02716435_02737089 NA coding upstream 74483 2716065 ~ 2737473 (-)
CI01000082_02750513_02759616 ACP5B coding upstream 108898 2750480 ~ 2761296 (-)
CI01000082_02762419_02777589 ABCD3, ABCD3A coding upstream 120398 2761980 ~ 2778096 (-)
G296982 NA non-coding downstream 103996 2534850 ~ 2535071 (-)
G296974 NA non-coding downstream 109180 2529433 ~ 2529887 (-)
G296967 NA non-coding downstream 145422 2493387 ~ 2493645 (-)
G296966 NA non-coding downstream 146915 2491950 ~ 2492152 (-)
G296965 NA non-coding downstream 147667 2491165 ~ 2491400 (-)
G297017 NA non-coding upstream 3264 2644846 ~ 2645182 (-)
G296951 NA non-coding upstream 102034 2743616 ~ 2747930 (-)
G297043 NA non-coding upstream 119851 2761433 ~ 2761646 (-)
G297051 NA non-coding upstream 159711 2801293 ~ 2807804 (-)
G297047 NA non-coding upstream 172487 2814069 ~ 2815014 (-)
G296906 NA other downstream 205155 2402819 ~ 2433912 (-)
CI01000082_00689066_00690051 NA other downstream 1948633 688512 ~ 690121 (-)
CI01000082_00678125_00678798 NA other downstream 1956761 677628 ~ 678839 (-)
CI01000082_02829738_02840354 NA other upstream 195620 2829738 ~ 2840354 (-)
CI01000082_03329243_03330818 NA other upstream 687552 3329134 ~ 3332093 (-)
CI01000082_04002837_04008950 BRAFLDRAFT_115150, CDK5 other upstream 1365410 4001099 ~ 4009112 (-)
CI01000082_04332255_04333022 NA other upstream 1678928 4330173 ~ 4334359 (-)
CI01000082_04698358_04700580 NA other upstream 2056620 4697533 ~ 4700580 (-)
G294821 NA other downstream 1966809 670484 ~ 671462 (-)
CI01000082_00666387_00667509 NA other downstream 1970431 665937 ~ 667840 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location