CI01000082_02829738_02840354


Basic Information

Item Value
gene id CI01000082_02829738_02840354
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 2829738 ~ 2840354 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000082_02829738_02840354.mRNA
ATGATCAATCTCTGCGCCCAGCAGGAAGGAAAACCTGCAGACAAGGAAAATGAAGACAAGAAAGATGATGAAGGCCCTGGCCCAGCACCAGCAACGGCCACAGAACAAAAACCGGCAGCCCCAGCCTCAGCTCCAGAACCGACGGCCCCGACTACAGCACCAGAACCGGCCCCCAAACCAGAGGAGACACCTGCAGACCCAGCCAACGTCCAGCCACCTGCTGAAGGTGAGGAGGCCCCTCCTCCTGAATCCCGGCCCATTGTAATAAACAAGCATTTTGATGCTCAACTCATCGAGATAGTTCAGCGGTACCGGCAACGGACTGAACAGTATAAAGAAAAGGTCATAGACCCCTATGCATCCTCCCCAGAGCGCAGTCCACCTGTCAACCGCAGGTATATCGCTTGGCTAAGCGTGGTGACCATTGCCTTTAACTATAACCTGTGGTTCGTACCAGTTCGTATGGCCTTCCCATATCATAACCCGGAGGTCATTCCATTGTGGTTCACCTTGGACATTATTGCTGACATCATCTATGTCATCGACATAATCGTTTTCCAGCCACGACTGCAGTTCTGTAAGGGGGGAGACATCATTGTAAGAAAACATTTATTTTTAACACAATTTATTGGTGTTTGCAGTCTTTTCTGGAAAATATCTATGTACTTGCGCAGTTACTATTTTGCAGTGCGGACTCTGATCAACATTGGCGGCTTGCCTGAGCCTCACACAGTCTTTGAGATTTCCTTTCAGTTAACAAACTTTTTCATTGGTGTCTTTGTCTTCTCAAGTTTGATTGGACAGACCTATTTCCGTGCATCTATGGATGCTTGTGTGGCGTACATGGTGACAAACCGCATCCCCAAGCTAGTTCAAACCAGAGTGCGCACCTGGTACAACTACACCTGGGACTCCCAGGGCATGCTGGATGAGTCTGAGCTACTGGAACAGATGCCTCTGGTGATGAGAACAGCCATCGCTGTGGACATCAACCTTGCTACTTTCCAAAAGATCGACCTCTTCAAGGGCTGTGACAACCAGATGCTGGTGGACATGTTATTGAGGCTGAAGTCCATTGTGTACTTGCCTGGAGACTTTGTGTGCAAGAAGGGCGACATTGGAAAGGAAATGTACATTATTAAGGCCGGAGAGGTACAAGTCATCGGTGGGCCGGACAATAAGATTGTGTTCGTGACTCTAAAGGCAGGCTGTGTGTTCGGGGAGATCAGTCTGCTACAGTCTTCAGCCAATGGAGGAAACAGAAGAACCGCTAACGTAGCGGCACATGGATTTGCCAACCTCTTCGTACTGGACAAGAAAGATCTCAATGACATCTTGATTCACTACCCTGAGTCTCAGAAAGTGCTGGCCAGGAAAGGACGGAAACTGCTGAAAGCGAAGGGTCCACCTCCTGCTGCTAAAGCCGACGAGGAAAAGAAGAAAGGACTGTCTATGTACGGACAAAAACCTCCCACTCCCAAACTTTTGCGTGCCTTTGCAGGAGGAGCGTTCACCAAAAAAGGCTTTATGGACAGACTTAAGGAGGAAAAGTCAGATGCAAAGAAAGATGAAGAAAGAAAAGATGATAAAAAGGAAGAGGAAAAGCCTGCTG

Function

NR:

description
cyclic nucleotide-gated channel beta cone

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000082_02829738_02840354.mRNA False 1612 mRNA 0.49 12 2829738 2840354

Neighbor

gene id symbol gene type direction distance location
CI01000082_02819813_02826440 NA coding downstream 3298 2818780 ~ 2826440 (-)
CI01000082_02762419_02777589 ABCD3, ABCD3A coding downstream 51642 2761980 ~ 2778096 (-)
CI01000082_02750513_02759616 ACP5B coding downstream 68442 2750480 ~ 2761296 (-)
CI01000082_02716435_02737089 NA coding downstream 92265 2716065 ~ 2737473 (-)
CI01000082_02686245_02689228 CNN3B, CNN3A, CNN3 coding downstream 140510 2685376 ~ 2689228 (-)
CI01000082_02927016_02952280 NA coding upstream 86218 2926572 ~ 2952666 (-)
CI01000082_02962536_02962848 MMP16 coding upstream 122134 2962488 ~ 2962848 (-)
CI01000082_03069619_03074440 STEAP2 coding upstream 227953 3068307 ~ 3074871 (-)
CI01000082_03101028_03103698 NA coding upstream 260549 3100903 ~ 3103921 (-)
CI01000082_03127420_03132170 C1QL3, C1QL3A, C1QL3B coding upstream 286853 3127207 ~ 3132170 (-)
G297055 NA non-coding downstream 5044 2824417 ~ 2824694 (-)
G297047 NA non-coding downstream 14724 2814069 ~ 2815014 (-)
G297051 NA non-coding downstream 21934 2801293 ~ 2807804 (-)
G297043 NA non-coding downstream 68092 2761433 ~ 2761646 (-)
G296951 NA non-coding downstream 81808 2743616 ~ 2747930 (-)
G297058 NA non-coding upstream 75222 2915576 ~ 2922022 (-)
G297100 NA non-coding upstream 157896 2998250 ~ 3003174 (-)
CI01000082_03136108_03172662 RSU1, RSU1.S non-coding upstream 332089 3135166 ~ 3172887 (-)
G297170 NA non-coding upstream 392359 3232713 ~ 3235633 (-)
G297206 NA non-coding upstream 413019 3253373 ~ 3253721 (-)
CI01000082_02639529_02641582 NA other downstream 187887 2638271 ~ 2641851 (-)
G296906 NA other downstream 395826 2402819 ~ 2433912 (-)
CI01000082_00689066_00690051 NA other downstream 2139304 688512 ~ 690121 (-)
G294821 NA other downstream 2158276 670484 ~ 671462 (-)
CI01000082_00666387_00667509 NA other downstream 2161898 665937 ~ 667840 (-)
CI01000082_03329243_03330818 NA other upstream 488780 3329134 ~ 3332093 (-)
CI01000082_04002837_04008950 BRAFLDRAFT_115150, CDK5 other upstream 1166638 4001099 ~ 4009112 (-)
CI01000082_04332255_04333022 NA other upstream 1480156 4330173 ~ 4334359 (-)
CI01000082_04698358_04700580 NA other upstream 1857848 4697533 ~ 4700580 (-)
CI01000082_00678125_00678798 NA other downstream 2154896 677628 ~ 678839 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_023562 cngb3.2 coding NC_007135.7 CM002908.2 31430890 ~ 31452923 (-)