CI01000082_03190143_03196523 (CUBN)


Basic Information

Item Value
gene id CI01000082_03190143_03196523
gene name CUBN
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 3190143 ~ 3196523 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000082_03190143_03196523.mRNA
CTGTATGATGGTCCAAACGAACAGTCTCCTCTGATTGGTACATTCTGTGGGAACACACCTCCTCCAGCGAATACCACCACCAGTACCAGCCTTCACATTGTGTTCCGGTCCGACATGTCAGTTTCATACAGAGGCTTCCAAATGGACTGGTACCAAAATGGTTGTGGTGGGGAACTCTTTGGGCCCACTGGTGCTTTCAACAGCCCAGGCTATCCTGACAAATACCCAGCAAACCGTGAGTGCATCTGGCACATCCATACCAGCCCTGGTAGTAGCATCTCCATCAACATCCTTGAGTTTGACGTGGAGTATCATCCTGACTGCAACTATGACAAGCTGGAGGTGTATGGAGGGCCTGACCTCTCCTCCCCACGACTGGCCCAGCTTTGCACCACACGCCCTCCCAATAACCCTCTGCAGGTGGCCAGTACAGGTAACGCTGTCACCGTTCGATTCACATCTGATCAAGTCGTGAGTGGCAGAGGCTTCAACGCAACCTGGACAGAGGTCCCAGGAGGATGTGGAGGGATTGTCACAGCCCCCAGTGGAGAGATCCATTCTCCACAGTATCCCAGCAACTACCCCAACAATGTGGACTGCTCCTGGCTCATCACAGTGGATGTAGGGCATCGGGTCTTCTTCAACTTCACTGATCTGGATATTGAAAGTCAGAGCTCATGTTCTTTTGACTATGTGGCTATCCATGATGGTCCACATGAGTCTTCTCCACTCCTGGGTAAAGTTTGTGGAGTATCCAGGCCTTCTCCCATAACATCCACAACAAACGTCATCTATGTTCGCTTCAGGTCAGATCAAAGTCAGAACCATAAAGGCTTCAGCGCCCAGTTCTCAGAAACATGTGGATCCACTATAATAGCTGACGATGTGGGAGGGGAGATTGCATCTCCTCGCTATCCATACTCTTACCCACCTAATCAGAACTGTAGTTGGATCATACTGACACAGGAGCCATTCAACCACGTGACTCTGTCCTTCACTGACTTTGAGGTAGAAATGGTATACAATAACTGCTCTCATGATCGTGTGGAGATCCTGGATGGAGACAATTATCAAGCCCCATCTGTCGGTCGTTACTGTGGGAATGAGTTGCCACACCCAGTCACTTCATTCAGCAATGCCCTTGTGGTAAATTTCATCTCCGATGCTTCAGTAGGAAGGAAAGGTTTTAGAGCGACCTACATGGCCTCAACCTCAGGTTGTGGTGGACATCTGTATATGGAGTCAGGGGCTTTTAACAGTCCAAACTATCCTGATGTATACCCACCTAATGTGGAGTGTGTGTGGACCATCACCAGTTCCCCTGGGAACCGTCTACAACTGTCCTTCATAATGTTTCAGCTGCAACAAAGTTCAGATTGCAGTAATGACTACCTGGAG

Function

symbol description
cubn Predicted to enable calcium ion binding activity; cargo receptor activity; and cobalamin binding activity. Predicted to act upstream of or within cholesterol metabolic process and protein transport. Predicted to be located in endosome; lysosomal membrane; and plasma membrane. Is expressed in pronephric duct; pronephric tubule; pronephros; proximal convoluted tubule; and proximal straight tubule. Orthologous to human CUBN (cubilin).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000082_03190143_03196523.mRNA True 1398 mRNA 0.49 10 3190143 3196523

Neighbor

gene id symbol gene type direction distance location
CI01000082_03187340_03189764 CUBN coding downstream 379 3187340 ~ 3189764 (-)
CI01000082_03184214_03186626 CUBN coding downstream 3517 3184173 ~ 3186626 (-)
CI01000082_03175106_03183324 CUBN coding downstream 6819 3174917 ~ 3183324 (-)
CI01000082_03136108_03172662 RSU1, RSU1.S coding downstream 17256 3135166 ~ 3172887 (-)
CI01000082_03127420_03132170 C1QL3, C1QL3A, C1QL3B coding downstream 57973 3127207 ~ 3132170 (-)
CI01000082_03200775_03204839 CUBN coding upstream 3695 3200218 ~ 3204839 (-)
CI01000082_03207155_03210294 CUBN coding upstream 10632 3207155 ~ 3210294 (-)
CI01000082_03210506_03213453 CUBN coding upstream 13983 3210506 ~ 3213453 (-)
CI01000082_03216898_03217396 NA coding upstream 18984 3215507 ~ 3217731 (-)
CI01000082_03217934_03225669 TRDMT1 coding upstream 21354 3217877 ~ 3225669 (-)
G297100 NA non-coding downstream 186969 2998250 ~ 3003174 (-)
G297058 NA non-coding downstream 268121 2915576 ~ 2922022 (-)
G297055 NA non-coding downstream 365449 2824417 ~ 2824694 (-)
G297047 NA non-coding downstream 375129 2814069 ~ 2815014 (-)
G297170 NA non-coding upstream 36190 3232713 ~ 3235633 (-)
G297206 NA non-coding upstream 56850 3253373 ~ 3253721 (-)
G297243 NA non-coding upstream 107693 3304216 ~ 3307917 (-)
G297298 NA non-coding upstream 272433 3468956 ~ 3470374 (-)
G297315 NA non-coding upstream 350455 3546978 ~ 3547720 (-)
CI01000082_02829738_02840354 NA other downstream 351176 2829738 ~ 2840354 (-)
CI01000082_02639529_02641582 NA other downstream 548292 2638271 ~ 2641851 (-)
G296906 NA other downstream 756231 2402819 ~ 2433912 (-)
CI01000082_00689066_00690051 NA other downstream 2499709 688512 ~ 690121 (-)
G294821 NA other downstream 2518681 670484 ~ 671462 (-)
CI01000082_03329243_03330818 NA other upstream 132611 3329134 ~ 3332093 (-)
CI01000082_04002837_04008950 BRAFLDRAFT_115150, CDK5 other upstream 810469 4001099 ~ 4009112 (-)
CI01000082_04332255_04333022 NA other upstream 1123987 4330173 ~ 4334359 (-)
CI01000082_04698358_04700580 NA other upstream 1501679 4697533 ~ 4700580 (-)

Expression


Co-expression Network