CI01000082_03207155_03210294 (CUBN)


Basic Information

Item Value
gene id CI01000082_03207155_03210294
gene name CUBN
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 3207155 ~ 3210294 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000082_03207155_03210294.mRNA
GTCCACGATGGCGAGACCGCCTCAGCTTACATGATTGGGAAATTCTGCGGCACCGGCGCCCCAGCTGAACTCTTCAGCTCCTATAATTCTCTGTACTTCTGGTTCCGCTCTGACCATTCAGTCAGTGGTCGCGGCTTCACCGTCGCCTGGCAATCCCAGGCACCAGTGTGTGGTGGAGAGTTGACCAATACATACGGTGACATCAAGTCACCCGGTTACCCAGGTAACTATCCACCTAACCGGGACTGTTATTGGACCGTGAATGTGAACCCTGGTCTGCTCATCACATTCGCTTTTGGCACCCTCAGTCTGGAGCACCATGATAACTGTAACTTTGACTACCTGGAGATCAGAGATGGACTGCTCCCAGAGGACCAAGTTCTGGGAAAATACTGTAGTACAGCATCACCACCACCTCTACAGACAACGGGACCATCTGCCTGGATCCACTTTCACTCTGATTTCAGCATCAGTGATCGGGGATTTCACATTACATACACTACCTCACCATCTGACCCAGGCTGCGGAGGCGTCTTTACAGACACAGAAGGCATCATCATCTCTCCTAACTGGCCTAATAACTATGCTCACAATAGGCAGTGCATTTATATCATCAGACAGCCACGCAGTGAATTGGTGGCGCTCAACTTCACCCACATGGACCTGGAGACTCACAGTGGCTGTCTTTTTGATTTTGTGGAGGTTCGAGACGGGACGGGTGAAACCGACCCACTCATTGGGAAGTACTGTGGAAGTACCCTGCCAGCACCAATATTGTCCACCGCTAATGGACTCTGGATCCGTTTCAAGTCCGACAGCTCTGTGTCCCGTGCTGGCTTCAGGGCCATGTATGAAGTTG

Function

symbol description
cubn Predicted to enable calcium ion binding activity; cargo receptor activity; and cobalamin binding activity. Predicted to act upstream of or within cholesterol metabolic process and protein transport. Predicted to be located in endosome; lysosomal membrane; and plasma membrane. Is expressed in pronephric duct; pronephric tubule; pronephros; proximal convoluted tubule; and proximal straight tubule. Orthologous to human CUBN (cubilin).

NR:

description
unnamed protein product, partial

GO: NA

KEGG:

id description
K14616 CUBN; cubilin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000082_03207155_03210294.mRNA True 859 mRNA 0.52 5 3207155 3210294

Neighbor

gene id symbol gene type direction distance location
CI01000082_03200775_03204839 CUBN coding downstream 2316 3200218 ~ 3204839 (-)
CI01000082_03190143_03196523 CUBN coding downstream 10632 3190143 ~ 3196523 (-)
CI01000082_03187340_03189764 CUBN coding downstream 17391 3187340 ~ 3189764 (-)
CI01000082_03184214_03186626 CUBN coding downstream 20529 3184173 ~ 3186626 (-)
CI01000082_03175106_03183324 CUBN coding downstream 23831 3174917 ~ 3183324 (-)
CI01000082_03210506_03213453 CUBN coding upstream 212 3210506 ~ 3213453 (-)
CI01000082_03216898_03217396 NA coding upstream 5213 3215507 ~ 3217731 (-)
CI01000082_03217934_03225669 TRDMT1 coding upstream 7583 3217877 ~ 3225669 (-)
CI01000082_03290868_03295427 NA coding upstream 80020 3290314 ~ 3296154 (-)
CI01000082_03329243_03330818 NA coding upstream 118856 3329134 ~ 3332093 (-)
CI01000082_03136108_03172662 RSU1, RSU1.S non-coding downstream 34285 3135166 ~ 3172887 (-)
G297100 NA non-coding downstream 203981 2998250 ~ 3003174 (-)
G297058 NA non-coding downstream 285133 2915576 ~ 2922022 (-)
G297055 NA non-coding downstream 382461 2824417 ~ 2824694 (-)
G297047 NA non-coding downstream 392141 2814069 ~ 2815014 (-)
G297170 NA non-coding upstream 22419 3232713 ~ 3235633 (-)
G297206 NA non-coding upstream 43079 3253373 ~ 3253721 (-)
G297243 NA non-coding upstream 93922 3304216 ~ 3307917 (-)
G297298 NA non-coding upstream 258662 3468956 ~ 3470374 (-)
G297315 NA non-coding upstream 336684 3546978 ~ 3547720 (-)
CI01000082_02829738_02840354 NA other downstream 368188 2829738 ~ 2840354 (-)
CI01000082_02639529_02641582 NA other downstream 565304 2638271 ~ 2641851 (-)
G296906 NA other downstream 773243 2402819 ~ 2433912 (-)
CI01000082_00689066_00690051 NA other downstream 2516721 688512 ~ 690121 (-)
G294821 NA other downstream 2535693 670484 ~ 671462 (-)
CI01000082_04002837_04008950 BRAFLDRAFT_115150, CDK5 other upstream 796698 4001099 ~ 4009112 (-)
CI01000082_04332255_04333022 NA other upstream 1110216 4330173 ~ 4334359 (-)
CI01000082_04698358_04700580 NA other upstream 1487908 4697533 ~ 4700580 (-)

Expression


Co-expression Network