CI01000082_03217934_03225669 (TRDMT1)


Basic Information

Item Value
gene id CI01000082_03217934_03225669
gene name TRDMT1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 3217877 ~ 3225669 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000082_03217934_03225669.mRNA
ATGGAGAACATGGACCGACTCCGTGTTCTGGAATTATACAGCGGAATAGGAGGAATGCATTATGCTTTAAAGGAGAGCTCAGTTCCAGCTGAAGTCGTGGCTGCTGTGGATGTCAACACGACAGCCAATGAAATCTACAAACACAACTTCCCCACTACCCCACTCCTGCCAAAAACTATTGAGGGAATGACGTTACAGGATTTTGACAAGCTGAACTTTGACATGATTTTGATGAGCCCACCGTGTCAACCATTCACCAGGATTGGTTTGCAGGGTGATATTGCTGACCCCAGAACAAAGAGCTTCCTTTATATCCTGGAGCTTCTGCCAAGGCTCAGCGAGCGGCCGCGCTTCATTCTGCTGGAGAATGTGAAGGGCTTTGAGACTTCTGCTGCAAGGGATGCTTTGCTTAAGACACTGAGAGAGTGTGACTACAGCTTTCAGGAGTTTCTGATCTCACCAACATCTCTTGGGATACCAAACTCTAGGCTCAGATACTTCCTCATTGCAAAGAGACCACCAGGATCCTTCTCATTCCCAACATCAGCAGAGATTATAGAGGGCTTCCCCATGTCTGAACCCCCAGACAGTCTCGCTGTTCCATACAATCATCCTACACCTTCTGAATCTGAGAGAGAAAAGACTGGGACGATCATTTTTAAGCTGGAGACCGAACAAGAGTTGGAAAAGAAGAGGAATCAGGACAAACAGGAGACTGTCCAGAGGCTGCAGGACTTTCTGCAGAAGGAAGAGGACATGGATCGGTATCTGCTGCCCCCCAAAACCCTGCTCAGATACGCTCTACTGATGGATGTAGTTCAGCCCAGCAGCAGGAGATCAGTTTGCTTTACTAAAGGTTATGGTCACTATGTGGAGGGCACCGGCTCCGTCCTGCAGTCTTGTGTGGATGTGGAGCTAGAGAGTGTGTTTAAGAACTTTGAGCTGCTTTCTGAAGAGGACAAACTGAAGCAGCTTCTCCAGTTAAAGCTGAGATACTTCACACCCAGAGAGATCGCCAACCTCATGGGCTTTCCTGCAGATTTCACATTTCCAAAGCAAATTTCCGTTAAGCAGCAGTACCGTGTGCTGGGGAACAGCCTGAACGTCCATGTGGTTTCACATCTTATACGTCTCATGATCTCATAATTTACATTACATTATACATAATCATTTTTTCTGTAAAGTTGTATATTGTTGAATAAA

Function

symbol description
trdmt1 Predicted to enable methyltransferase activity. Predicted to act upstream of or within methylation. Is expressed in brain; immature eye; and liver. Orthologous to human TRDMT1 (tRNA aspartic acid methyltransferase 1).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K15336 TRDMT1, DNMT2; tRNA (cytosine38-C5)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000082_03217934_03225669.mRNA True 1203 mRNA 0.46 10 3217877 3225669

Neighbor

gene id symbol gene type direction distance location
CI01000082_03216898_03217396 NA coding downstream 146 3215507 ~ 3217731 (-)
CI01000082_03210506_03213453 CUBN coding downstream 4424 3210506 ~ 3213453 (-)
CI01000082_03207155_03210294 CUBN coding downstream 7583 3207155 ~ 3210294 (-)
CI01000082_03200775_03204839 CUBN coding downstream 13038 3200218 ~ 3204839 (-)
CI01000082_03190143_03196523 CUBN coding downstream 21354 3190143 ~ 3196523 (-)
CI01000082_03290868_03295427 NA coding upstream 64645 3290314 ~ 3296154 (-)
CI01000082_03329243_03330818 NA coding upstream 103481 3329134 ~ 3332093 (-)
CI01000082_03340985_03351365 CCDC129 coding upstream 115010 3340679 ~ 3351365 (-)
CI01000082_03399450_03399994 EIF1B, EIF1 coding upstream 173503 3399172 ~ 3399994 (-)
CI01000082_03420930_03425791 PTCHD3A coding upstream 194672 3420341 ~ 3425890 (-)
CI01000082_03136108_03172662 RSU1, RSU1.S non-coding downstream 45007 3135166 ~ 3172887 (-)
G297100 NA non-coding downstream 214703 2998250 ~ 3003174 (-)
G297058 NA non-coding downstream 295855 2915576 ~ 2922022 (-)
G297055 NA non-coding downstream 393183 2824417 ~ 2824694 (-)
G297047 NA non-coding downstream 402863 2814069 ~ 2815014 (-)
G297170 NA non-coding upstream 7044 3232713 ~ 3235633 (-)
G297206 NA non-coding upstream 27704 3253373 ~ 3253721 (-)
G297243 NA non-coding upstream 78547 3304216 ~ 3307917 (-)
G297298 NA non-coding upstream 243287 3468956 ~ 3470374 (-)
G297315 NA non-coding upstream 321309 3546978 ~ 3547720 (-)
CI01000082_02829738_02840354 NA other downstream 378910 2829738 ~ 2840354 (-)
CI01000082_02639529_02641582 NA other downstream 576026 2638271 ~ 2641851 (-)
G296906 NA other downstream 783965 2402819 ~ 2433912 (-)
CI01000082_00689066_00690051 NA other downstream 2527443 688512 ~ 690121 (-)
G294821 NA other downstream 2546415 670484 ~ 671462 (-)
CI01000082_04002837_04008950 BRAFLDRAFT_115150, CDK5 other upstream 781323 4001099 ~ 4009112 (-)
CI01000082_04332255_04333022 NA other upstream 1094841 4330173 ~ 4334359 (-)
CI01000082_04698358_04700580 NA other upstream 1472533 4697533 ~ 4700580 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location