CI01000082_03420930_03425791 (PTCHD3A)


Basic Information

Item Value
gene id CI01000082_03420930_03425791
gene name PTCHD3A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 3420341 ~ 3425890 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000082_03420930_03425791.mRNA
ACAATTCTGATACAGAGAAACTGAGCTTTACGTTAATTTAATTTATTTAGAACAGCTTTTTCCCCTCTTAACTTTTAATCTTTCAAAATGCCGGTGAACATGGCTGGATGCACCACAGACTGCGTGGAGAAGCCGATCTCCATCTGCTTCCAGAAGTTCGGCCGCTTTGTGGGAACTTACCCGTGGTGGTTCTTCATCTCTCCTCTGTTGATCTCTGCGGTGCTGGGGAGTGGGTTTTATTTCTTAGAAGATCGTGAGGCCAATGACATTGAGGATCAGTTCACACCTGTGAACGGTCCTGCCAAGCTGGAGAGGCAGTTTGTGCAGGAAAACTTCCCGCAGAACGACTCGGTGTTCTCCAACCAAAGACTCTACACGGATGGAGTTTACGCATCCTTCATAGCGGTGTCAACATCCTCCAACATCCTCACAGATGCTGCCTTTCAGGAGATAGTCACTTTAGACAGGAAGGTCAAGGAGCTGAATGTGTCCATGGGTCACGAGGTGCTCACTTTCGAGGGACTTTGCGCAAGACGATATAAGAAATGCATACCTAATAAGATACTGGATATTTACAAATATTATGGGAAAAATTTAGAAAAGACCGAACTCACTTTCCCGTTCTTTCGTTTCGGATTCGCGTACATTTTCCTGGGCTATTCTGTTGGTGGAGTGGATTTAAACTCTTCTGTTATTAAAAGTGCAAAGGCAGTGCGACTGTTGTATTTCCTGAAGGAGGATAATCGTACCAGAACAGATTTATGGCTGAATGAATTCCTTAAGGTTTTTCCATCTAATTTATCATTAAACTTCATTAAGGTGACCTATTCCACATCTCTGTCAAGGCAGGTGGAATTTGAGGCAAACACAAAGGATGTGATTCCCCTCTTCTCTATCACATACATTATTGCCATTGCATTCTCAATTCTCTCTTGTTTGAGGTTTGACTGTGTCAGAAATAAAGTATGGGTTGCCACATTTGGAGTGTTCTCCGCTGGACTGGCTGTTCTGTCCTCTTTTGGGATGATGTTACACATTGGCGTCCCATTTGTCATGACTGTTGCTAATTCTCCATTCCTGATATTAGGGATCGGAGTGGACGACATGTTTATCCTCATCTCCTGCTGGCAGCAGACGAATGTTCACGATCAAGTAGAGACTCGCCTTGCCAAAACGTACAAAGAGGCGGCCATTTCGATCACCATCACCACCCTCACGGACGTGCTCGCTTTCTACATCGGCCTCATGACGCCTTTCCGCTCTGTCCGCTCCTTCTGCTTGTACACCAGCACTTCCATCCTCTTCTGCTACATCTACAGCATCACATTTTTCGGAGCTTTCCTCGTTCTTAACGGACGGCGAGAGAACAGCAACAAGCACTGGCTGACCTGCAAGGAAGTACCAGAGGAGTGCCCTGTGGGTCAGTCAAAGTGGTATGAATTATGTTGCGTGGGAGGCGCTTACGACCCTCAAACTGGCAAGGAGGAGGTTCAGCCCATGAATCACTTCTTTAAAAAATACTACGGCCCTTTTCTGACAAAATCGTGGATGAAGGTCTTTGTGATTGTGTTTTATTGCATCTATTTGATTATCAGCATTTATGGCTGCTTCCAAATTCAAGAAGGAATCGATCTTCGTAATTTGGCAGCTGATGATTCTTATGTGGTAAAATACTATGACAACGAGAAGGCATATTTCTCTGAATATGGGCCAAATATCATGGTTGTCATACGACGGGAATTTCCATATTGGGATGAAAAGTACATGTCAGATCTTGAAACTTGCATTGAAGATTTCAAAAATTTGTCTTTCATTGAAAAGGATATATTCACCTCCTGGATCAAATCATACAAGTACTACGGAAATCACACGAAACTCAATCTGAGTACTGAAGATGTCTTTAAAGATAATTTGGGAACATTTCTGCGTTTTTATACCGATTTCAAACAGGACGTCAATTTCACTAACAACTCCATCCACGCGTCTCGCTTATTCATCCAAACCGTAAACATCTCTACCGCCCTGGATGAGATGAATATGTTGAATAAATTAAGAGAGACAGCACAAAAGTGCCCTGTTCCTTTACTAGTTTACCACCCTGCCTTCATCTACCATGACCAGTATGCGGTGATAGTCATCAACACCATCCAGAACATTGCTGTTACGACAGCCGTAATGTTGCTCATCTCCCTTCTCCTCATCCCAAACCCTCTATGCTCTCTCTGGGTGACTTTTTCTATCGCATCTGTCATTGTAGGGGTCACTGGGTTCATGGCATTATGGGATGTTAACTTAGACACTATCTCGATGATCATTCTTGTTGTCTGCATTGGTTTTTCTGTAGACTTCTCTGCTCATATATCTTATGCCTTTGTCTCCAATAAGAAGCCCAGTGCGAATGAAAAGGCAGTGGAGGCCTTGTTTAATTTAGGTTACCCTATTTTGCAGGGGGCTGTGTCTACTATTCTTGGGGTGGTAGTATTGTCTGCTTCGAAGAACTACATCTTTAGAACTTTCTTTAAAATCATGTTCTTGGTAATCTTATTTGGTCTCTTCCATGGCTTAACTTTTATCCCAGTTTTTCTGACCTTTTTTGACATATGTAGTGGCACACCAGCTAAGAAGAAATCAGGCCCAGAAGAGCAGGCCATGAAGAACAGCCACGGCAATAATGTTCAAGCGGTGGCAAAGGATGGTGAGGTGAAAGAACGGGAAATTTACGTCAATCACAATTTTCAACCCGACAACCACCGAACGTGTCAGTCTCAGCCGTGCTCTGCATTATGGATGATAACCGGCGGCAATAATCATCATGTCCAAGATAATCGTATGTGTGTGGCAAGCACCATCCCAATGTTCAGAGTGGACAGTCAGACCTATGAGGTTCACATGTATACACCCTCTGATGATGCCATGTTAAGAGTCAACTGTCAATCAAAACACAGCTCTGAAGGTCAAAACTGTGTTTTAGGAAACAGCAACCACATTCAAGATTCAAATGTTCCCACTCTTAATGGTTCTGATTTGGCCATTCTGTAAAATCCTTATACTTCATTTTCTTCCAAATACATCCCGTTTGTATGTGTAACACCTTTTATATGTTTAAATTAAAATTACTAATGTAATTTTACTATTGTACTAATGTAATGTAAATCAACAAGACGACAGCATGGCACCTTTTTACAAAAATACATCTGGGCCAATGGTTTTAGGACTTTTTAAGGGTTTCAGGAGTTAGTAATGCTGGCATTAATCTGTAAAAGAAAAAAAACAAATGTTAAAAAGCAACAAAAAAAAAGCGTTTAAAAATATGTTTACAAAATGCATCACAGATGTAAGCAATGTACACCTAAATGAAATTACCATCTTCATTTATGAAACACAAGCATAACAAATGTGTAAATCATTCATAAAACCATTTTTAATTGTCAGATTCAGTTGAAAGCAACAATTTATGTAAAAATGGATTTATGAACAATTTACACAGAACTTCATTGTTTCATGAATGAGCCCCAATCTCTCAGAAAATATTTAAATGTCTTATTTTTGCAGGGTATGTGAATATTAATATTTCTATTTAGTTATAAAAGTACAATTATGTAGTTTTTCTTTTTTTTTGTGAAATAAA

Function

symbol description
ptchd3a Orthologous to human PTCHD3 (patched domain containing 3).

NR:

description
novel protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000082_03420930_03425791.mRNA True 3628 mRNA 0.41 4 3420341 3425890

Neighbor

gene id symbol gene type direction distance location
CI01000082_03399450_03399994 EIF1B, EIF1 coding downstream 20347 3399172 ~ 3399994 (-)
CI01000082_03340985_03351365 CCDC129 coding downstream 68976 3340679 ~ 3351365 (-)
CI01000082_03329243_03330818 NA coding downstream 88248 3329134 ~ 3332093 (-)
CI01000082_03290868_03295427 NA coding downstream 124187 3290314 ~ 3296154 (-)
CI01000082_03217934_03225669 TRDMT1 coding downstream 194672 3217877 ~ 3225669 (-)
CI01000082_03431448_03433211 RDH12L, RDH12 coding upstream 5558 3431448 ~ 3433211 (-)
CI01000082_03460478_03466764 NA coding upstream 34152 3460042 ~ 3466821 (-)
CI01000082_03484403_03543322 RALYL coding upstream 58513 3484403 ~ 3543322 (-)
CI01000082_03665937_03666736 NA coding upstream 239965 3665855 ~ 3666736 (-)
CI01000082_03751828_03759981 NRBP2B, NRBP2 coding upstream 325938 3751828 ~ 3759981 (-)
G297243 NA non-coding downstream 112424 3304216 ~ 3307917 (-)
G297206 NA non-coding downstream 166620 3253373 ~ 3253721 (-)
G297170 NA non-coding downstream 184708 3232713 ~ 3235633 (-)
CI01000082_03136108_03172662 RSU1, RSU1.S non-coding downstream 247471 3135166 ~ 3172887 (-)
G297100 NA non-coding downstream 417167 2998250 ~ 3003174 (-)
G297298 NA non-coding upstream 43066 3468956 ~ 3470374 (-)
G297315 NA non-coding upstream 121088 3546978 ~ 3547720 (-)
G297289 NA non-coding upstream 146031 3571921 ~ 3576845 (-)
G297286 NA non-coding upstream 166595 3592485 ~ 3618325 (-)
G297316 NA non-coding upstream 204428 3630318 ~ 3630859 (-)
CI01000082_02829738_02840354 NA other downstream 581374 2829738 ~ 2840354 (-)
CI01000082_02639529_02641582 NA other downstream 778490 2638271 ~ 2641851 (-)
G296906 NA other downstream 986429 2402819 ~ 2433912 (-)
CI01000082_00689066_00690051 NA other downstream 2729907 688512 ~ 690121 (-)
CI01000082_04002837_04008950 BRAFLDRAFT_115150, CDK5 other upstream 581102 4001099 ~ 4009112 (-)
CI01000082_04332255_04333022 NA other upstream 894620 4330173 ~ 4334359 (-)
CI01000082_04698358_04700580 NA other upstream 1272312 4697533 ~ 4700580 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_023578 PTCHD3 coding NC_007135.7 CM002908.2 32560395 ~ 32563875 (-)