CI01000082_03484403_03543322 (RALYL)


Basic Information

Item Value
gene id CI01000082_03484403_03543322
gene name RALYL
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 3484403 ~ 3543322 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000082_03484403_03543322.mRNA
CAATATATGAGTGTGGTTGATGTCGTCCCCATCATGTCTCTGCTTCACAGGAGAAGAATGACCGGGAAGAGTCAGACCAGCAATGTCACTAACAAGAACGACCCACGCTCCCTCAACTCACGGGTCTTTATCGGCAACCTCAACACTGCCATTGTGAAAAAGGGCGACATCGAGGTCATCTTCGCCAAGTACGGCAAGATTGTGGGCTGTTCGGTGCACAAGGGTTACGCTTTCGTCCAATACATGAGTGAAAGGAACGCACGGGCGGCCGTGGCAGGCGAGAACGCCAGGATTATTGCAGGACAGCCGCTGGATATTAACATGGCCGGAGAGCCCAAACCCTACAGGCCTAAAGCAGGATCCAAACGACCCCTAACTGCTGTCTACAGTGGTTATGAATTTGATTATGATTACTACAGAGATGATTTCTACAATAGGCTCTTTGACTATCACGGACGGGTGGCTCCTCCTCCGAGGGCAGTGATCCCGCTGAAGCGCTCGCGAGTGGTACTTCCATCCACTCGACGCGGGAAGAGTTCCTTCCCTATTAAAACCTCCTCCGCTTCTTCCTCAAGACCTCCATCATCATCATCGTCCTTCTCCTCTGGGCTGAAATTGAAGACCGATCAACTCCAGACTATCAAACGTGAGCTGACTCAGATCAAGATGAAGATCGACTCTCTTCTGGGTCGCCTGGAGAAGATCGAGAAACAGCAGCGATCCGAGTGCGAGCCTCATAGGAAATATGAGGATAACTGTGACTCTTTGCATGAGGAGTCGATATCGGAGACGGCGGACAACTCCGGAGAAGAGGGAGGAGAGGGACCGCTGGATGCAGAGGCGGGAGAAATGACAGATGGTGGCGAGGATGACTACGACGAAGAAGGCAGCACTGATCTGGTACGTTCACCCCCCGCGGGCCTCACTGGC

Function

symbol description
ralyl Predicted to enable RNA binding activity. Is expressed in brain. Orthologous to human RALYL (RALY RNA binding protein like).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000082_03484403_03543322.mRNA True 930 mRNA 0.53 6 3484403 3543322

Neighbor

gene id symbol gene type direction distance location
CI01000082_03460478_03466764 NA coding downstream 17582 3460042 ~ 3466821 (-)
CI01000082_03431448_03433211 RDH12L, RDH12 coding downstream 51192 3431448 ~ 3433211 (-)
CI01000082_03420930_03425791 PTCHD3A coding downstream 58513 3420341 ~ 3425890 (-)
CI01000082_03399450_03399994 EIF1B, EIF1 coding downstream 84409 3399172 ~ 3399994 (-)
CI01000082_03340985_03351365 CCDC129 coding downstream 133038 3340679 ~ 3351365 (-)
CI01000082_03665937_03666736 NA coding upstream 122533 3665855 ~ 3666736 (-)
CI01000082_03751828_03759981 NRBP2B, NRBP2 coding upstream 208506 3751828 ~ 3759981 (-)
CI01000082_03775919_03779615 NA coding upstream 232250 3775572 ~ 3779615 (-)
CI01000082_03783967_03785384 NA coding upstream 240645 3783967 ~ 3785384 (-)
CI01000082_03787965_03790090 NA coding upstream 244318 3787640 ~ 3790090 (-)
G297298 NA non-coding downstream 14029 3468956 ~ 3470374 (-)
G297243 NA non-coding downstream 176486 3304216 ~ 3307917 (-)
G297206 NA non-coding downstream 230682 3253373 ~ 3253721 (-)
G297170 NA non-coding downstream 248770 3232713 ~ 3235633 (-)
CI01000082_03136108_03172662 RSU1, RSU1.S non-coding downstream 311533 3135166 ~ 3172887 (-)
G297315 NA non-coding upstream 3656 3546978 ~ 3547720 (-)
G297289 NA non-coding upstream 28599 3571921 ~ 3576845 (-)
G297286 NA non-coding upstream 49163 3592485 ~ 3618325 (-)
G297316 NA non-coding upstream 86996 3630318 ~ 3630859 (-)
G297317 NA non-coding upstream 90328 3633650 ~ 3633849 (-)
CI01000082_03329243_03330818 NA other downstream 153652 3329134 ~ 3332093 (-)
CI01000082_02829738_02840354 NA other downstream 645436 2829738 ~ 2840354 (-)
CI01000082_02639529_02641582 NA other downstream 842552 2638271 ~ 2641851 (-)
G296906 NA other downstream 1050491 2402819 ~ 2433912 (-)
CI01000082_00689066_00690051 NA other downstream 2793969 688512 ~ 690121 (-)
CI01000082_04002837_04008950 BRAFLDRAFT_115150, CDK5 other upstream 463670 4001099 ~ 4009112 (-)
CI01000082_04332255_04333022 NA other upstream 777188 4330173 ~ 4334359 (-)
CI01000082_04698358_04700580 NA other upstream 1154880 4697533 ~ 4700580 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location