XLOC_010785 (cct3)


Basic Information

Item Value
gene id XLOC_010785
gene name cct3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 30408697 ~ 30421275 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021092
TGCTAATTGGTCCACTCTGTTGCTCAGTTCTCAACCACGCCTCGTGCATCCTCTCCTCTTGCCGTTGTGCGCGTTGTCCGGTACCGGTGATCTAACCACGCCGCAAATATGATGGGCCGACCGGTTCTCGTGCTTAGTCAGAACATCAAGAGAGAATCTGGACGGAAGGTCCAGATTGGAAACATCTCTGCGGCTAAGACCATAGCAGACATCATCAGGACATGCCTAGGACCAAGGGCTATGATGAAGATGCTGCTGGATCCCATGGGTGGTATCGTCATGACCAATGATGGCAATGCCATTTTGAGAGAGATCCAGGTCCAGCATCCTGCTGCCAAGTCCATGATTGAGATTAGCCGCACACAGGATGAAGAAGTTGGAGATGGGACCACCTCTGTCATCATTCTAGCGGGTGAGATGCTGTCAGTGGCTGAGCAGTTTTTGGAGCAGCAGATGCATCCTACTGTGGTGATCGGTGCATACAGACAAGCTCTGGATGACATGTTGAACATACTCAAAGACATAAGCACTCCAGTAGATGTGAGTAATCGAGACATGATGTTGAAGATAATAAACTCTGCAATCAACACCAAAGCACTCAGCCGCTGGTCCACATTGGCCTGTAACATCGCTCTGGATGCTGTCCGTACTGTTGAGCTGGAGGAAAATGGACGCAAAGAGATTGACATTAAGAAGTATGCCAAAGTTGAAAAGGTTCCTGGTGGCATTATCGAAGATTCATGCGTGCTGAGGGGTGTGATGGTGAATAAGGATGTAACTCATCCCCGCATGCGCAGACTCATCAAGAACCCCAGAATTGTTCTGCTGGACTGTTCTCTGGAGTACAAGAAGGGCGAGAGCCAGACTGATATTGAGATTGCTCGTGAGGAAGACTTCGCCCGCATTCTGCAGATGGAGGAAGAATACGTTCAGCAGATCTGTGAAGACATCATTCGGCTCAAACCTGACCTAATCTTCACAGAGAAGGGCATTTCTGATCTGGCTCAGCACTATTTGATGAAAGCAAACATCACTGCTATCCGCCGTATCAGGAAGACGGACAACAACCGCATTGCAAGAGCGTGTGGTGCACGTATTGCCAGCAGAACCGATGAGCTCACTGAAGATGATGTGGGTACAGGAGCAGGCCTTTTTGAAGTCAAGAAGATCGGCGACGAGTACTTCACCTTTGTGACAGAGTGTAAAGACCCCAAAGCATGTACCATCCTGCTCAGAGGAGCCAGCAAGGAAATCTTGGCGGAAGTGGAACGAAACCTACAGGATGCCATGCAAGTGTGTCGTAATGTCCTGCTGGACCCATATCTGCTGCCGGGTGGTGGCGCAGTGGAGATGGAGGTGTCCCATCGGCTGACGGAGCGCTCTCGAGCTATGACTGGTGTGGAGCAGTGGCCGTACCGCGCTGTAGCTCAGGCTCTGGAGGTTGTCCCTCGCACACTCATCCAGAACTGTGGAGCTTCAGCCATTCGTGTGCTCACTTCTCTGAGGGCCAAGCACACTCAGGAGGGAAACTCCTCATGGGGTGTTAATGGAGAGACAGGAACTCTTGCTGATATGGAGCAGCTGGGAATCTGGGAACCGCTGGCTGTTAAAGCCCAGACTTACAAAACTGCAGTGGAGACGGCTATCCTGTTACTGCGCATTGATGACATCGTTTCTGGCCACAAGAAGAAGGGAGATGGAGAGCAGACGGGTGGAGCACCGATGGAGGACAGAGAGTAGAGGAGCTGGAGATCTTGAGGATGAAGGAACTACAGTCTAGAAGGACAGTAATGCAGCAAATGAAGAGCAAACACACACGAGCATTTATCTGTGCAAAACACACAACGTTCTCATCAGAAATCCATTTGCACCAGTGCTTTGTGTTGTCATTAGGCCAGAAGCTCTTCTTCCCTCATTTTTATTTTCCGCCGGCAAATGGAACGACCCGGGATTGGATTAGAATGTGTTTGTGCTAGTATCTCTGTGCTTCATTTTGCTGGTATTGTTACTTTGTATTTCCTACCGGTGATAAATTTCAATATCTAACCCTCTTGTGGttcatttgttttgctttctcaACCTCGTTTCCAACAACCGGATTTCAATCAGAGTTCTTGTTCCTTAAAGCT
>TCONS_00021093
AGCTAACTAGTGTGGCACGGGGGCCTCGCGTGTCTGACAAGCTCATGTCAGAACATCAAGAGAGAATCTGGACGGAAGGTCCAGATTGGAAACATCTCTGCGGCTAAGACCATAGCAGACATCATCAGGACATGCCTAGGACCAAGGGCTATGATGAAGATGCTGCTGGATCCCATGGGTGGTATCGTCATGACCAATGATGGCAATGCCATTTTGAGAGAGATCCAGGTCCAGCATCCTGCTGCCAAGTCCATGATTGAGATTAGCCGCACACAGGATGAAGAAGTTGGAGATGGGACCACCTCTGTCATCATTCTAGCGGGTGAGATGCTGTCAGTGGCTGAGCAGTTTTTGGAGCAGCAGATGCATCCTACTGTGGTGATCGGTGCATACAGACAAGCTCTGGATGACATGTTGAACATACTCAAAGACATAAGCACTCCAGTAGATGTGAGTAATCGAGACATGATGTTGAAGATAATAAACTCTGCAATCAACACCAAAGCACTCAGCCGCTGGTCCACATTGGCCTGTAACATCGCTCTGGATGCTGTCCGTACTGTTGAGCTGGAGGAAAATGGACGCAAAGAGATTGACATTAAGAAGTATGCCAAAGTTGAAAAGGTTCCTGGTGGCATTATCGAAGATTCATGCGTGCTGAGGGGTGTGATGGTGAATAAGGATGTAACTCATCCCCGCATGCGCAGACTCATCAAGAACCCCAGAATTGTTCTGCTGGACTGTTCTCTGGAGTACAAGAAGGGCGAGAGC
>TCONS_00021094
GTTGTCTTGGCTTGGTGTTAGGTTTTAAGGCAGTGAatgttatttgaatttttttagtGAATGAAGAGTTTAGAGTTCATCATATGAAGAAGCAGATTTAATGCCCATTGGCTCTGTTTTTGGTACAGGTCAGAACATCAAGAGAGAATCTGGACGGAAGGTCCAGATTGGAAACATCTCTGCGGCTAAGACCATAGCAGACATCATCAGGACATGCCTAGGACCAAGGGCTATGATGAAGATGCTGCTGGATCCCATGGGTGGTCGGGTGAGATGCTGTCAGTGGCTGAGCAGTTTTTGGAGCAGCAGATGCATCCTACTGTGGTGATCGGTGCATACAGACAAGCTCTGGATGACATGTTGAACATACTCAAAGACATAAGCACTCCAGTAGATGTGAGTAATCGAGACATGATGTTGAAGATAATAAACTCTGCAATCAACACCAAAGCACTCAGCCGCTGGTCCACATTGGCCTGTAACATCGCTCTGGATGCTGTCCGTACTGTTGAGCTGGAGGAAAATGGACGCAAAGAGATTGACATTAAGAAGTATGCCAAAGTTGAAAAG
>TCONS_00021095
TCCTCTTGCCGTTGTGCGCGTTGTCCGGTACCGGTGATCTAACCACGCCGCAAATATGATGGGCCGACCGGTTCTCGTGCTTAGTCAGAACATCAAGAGAGAATCTGGACGGAAGGTCCAGATTGGAAACATCTCTGCGGCTAAGACCATAGCAGACATCATCAGGACATGCCTAGGACCAAGGGCTATGATGAAGATGCTGCTGGATCCCATGGGTGGTATCGTCATGACCAATGATGGCAATGCCATTTTGAGAGAGGTGATTTGAACCCTGCTACATTATCTGTGAGTTGTTAAATGAAATCTGTatcttgattttaattaatgttaaattgTTTCATGTGGACTTTAGATCCAGGTCCAGCATCCTGCTGCCAAGTCCATGATTGAGATTAGCCGCACACAGGATGAAGAAGTTGGAGATGGGACCACCTCTGTCATCATTCTAGCGGGTGAGATGCTGTCAGTGGCTGAGCAGTTTTTGGAGCAGCAGATGCATCCTACTGTGGTGATCGGTGCATACAGACAAGCTCTGGATGACATGTTGAACATACTCAAAGACATAA

Function

symbol description
cct3 Predicted to enable unfolded protein binding activity. Acts upstream of or within embryonic eye morphogenesis and negative regulation of retinal cell programmed cell death. Predicted to be part of chaperonin-containing T-complex. Orthologous to human CCT3 (chaperonin containing TCP1 subunit 3).

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0046671 negative regulation of retinal cell programmed cell death biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03110 Chaperones and folding catalysts
ko03036 Chromosome and associated proteins
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-020419-5 Predicted to enable unfolded protein binding activity. Acts upstream of or within embryonic eye morphogenesis and negative regulation of retinal cell programmed cell death. Predicted to be part of chaperonin-containing T-complex. Orthologous to human CCT3 (chaperonin containing TCP1 subunit 3).

Ensembl:

ensembl_id ENSDARG00000016173

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021092 False 2129 mRNA 0.49 14 30408697 30421275
TCONS_00021093 False 771 processed_transcript 0.49 8 30417854 30421018
TCONS_00021094 False 570 processed_transcript 0.45 5 30419164 30420703
TCONS_00021095 True 566 lncRNA 0.47 5 30419470 30421222

Neighbor

gene id symbol gene type direction distance location
XLOC_010784 NA coding downstream 486927 29919595 ~ 29921770 (-)
XLOC_010783 tnfaip8l2b coding downstream 694157 29698565 ~ 29714540 (-)
XLOC_010782 scnm1 coding downstream 718485 29685557 ~ 29690212 (-)
XLOC_010781 NA coding downstream 757972 29647214 ~ 29650725 (-)
XLOC_010780 hormad1 coding downstream 851359 29551023 ~ 29557338 (-)
XLOC_010786 pdia7 coding upstream 1206 30422481 ~ 30434279 (-)
XLOC_010787 NA coding upstream 83241 30504516 ~ 30519239 (-)
XLOC_010788 lmna coding upstream 99082 30520357 ~ 30570161 (-)
XLOC_010789 mc5rb coding upstream 161714 30582989 ~ 30584279 (-)
XLOC_010790 ldlrad4b coding upstream 200409 30621684 ~ 30655980 (-)
XLOC_010626 CR392024.2 misc downstream 9513522 20895112 ~ 20895175 (-)
XLOC_010779 NA non-coding downstream 869744 29531348 ~ 29538953 (-)
XLOC_010777 BX248517.1 non-coding downstream 878335 29515971 ~ 29530362 (-)
XLOC_010769 CR938717.1 non-coding downstream 1252845 29155738 ~ 29155852 (-)
XLOC_010791 BX005347.1 non-coding upstream 227112 30648387 ~ 30648504 (-)
XLOC_010798 NA non-coding upstream 745711 31166986 ~ 31169382 (-)
XLOC_010800 NA non-coding upstream 822505 31243780 ~ 31244681 (-)
XLOC_010802 NA non-coding upstream 963808 31385083 ~ 31407686 (-)

Expression


Co-expression Network