CI01000082_03966490_03976509 (TMEFF1B)


Basic Information

Item Value
gene id CI01000082_03966490_03976509
gene name TMEFF1B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 3965759 ~ 3976509 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000082_03966490_03976509.mRNA
ATTTGTCAGAGAAGAAGAGCGACCTGCGTGTGTGCGACGCCACCACGTGCCGTTACAACGGGATCTGCCAAAACAGTGGTGCTGACATCAAATGCGTATGTCAGTTTCAGTGCTCTAAGAACTACGTCCCCGTGTGCGGTACAAACGGAGACACCTATCAGAACGAGTGCTATCTGAAACAAGCAGCCTGTACCCAGCAGAGACCCATCTTTCTGGCCTCTGAGGGCCCCTGCTATCCTGATAGCAGCTCAGGATCTGGAGATGGAGAATATGAGGGATCAGGCACAGATTCGGGCAAGAAAGTCACAAAATGCAGCAACTGCAAGTACGGCGCTGAATGTGACGAAGATGCAGAGGACGAGGACTCCTGTTCGTGTAAAATCGACTGCAGTGGGCACAATGAGAATCCAGTGTGCGGCACAGACGGAAACTCCTACCATAACCCCTGCCTGGTGCGAGAGGCGTCCTGTATGAAGCAGGAACAGATCGATGTGAAACATTTAGGGAGATGCCCAGATAAAGACAAAGCTAAGAAACCTGAAGCTGGGCTTCCCTACAAGCCAGAATTTACTGATCCAGCAAAAGCCGGTGAAGGAAAAGGATACGGCTGGATGCCCGTTCCCTGCATTGATGACTACGCCAACTTCTGCGTTCATGGCCAGTGTGAATTTAATTTCGGCGTCGCCTCCTGCCGGTGTGATTCAGGTTACACGGGGACACAGTGTGAGGAGATTGCAGACTTTAACATTCTGTATGTGGTACCCAGTGGTCAGAAACTTCATTATGTGCTCATAGCTGCTATCATTGGAGCCGTGCAGATCGCCATTATTGTGGCAGTGGTCATGTGTATTACCAGGAAATGTCCTAAGAATAATCGTGGAAGACGGCAAAAGCAGAACTTTTCATCAAACGCCACTTCAAGGATGATGTAGCTTGTTTTTATTTTATTTTTTTTTATACTTTTTGTACCAAGTGGATTACAGTTTTAATGTGCTTTTTTGTTTTGTGCTTTCTTGACTCTGGACAATAAGATTATTTTCGAATTTAAATTTTATTTCATTATTTTATTGGATGGTGCCTTATTGTTTTCTTGTTTTCAGGACATTTTAGGTACTTGATGTCAGTGGCAAACACTGTCAAATGAATGATAAAAGCCAGCTCTTTTTTGTCGAGTTTTTTGTTTTTATTTTTCCTTTAGGTTGTGGTGCCAGTTTTTTTTTGTTTTTTTTTTGTTTGTTTTTTACGTATTGTTAAATGTAACTCTCGGCACACAAACTGTACCACAAAAACGGACGTCCTCAATTTTCATGGAATGTGCTTCTTTACTGAATATATTAACTCTGAACTGTCTTTAACTGCCCCCTTTGGTTTGATTTTTATTTCCTCAAATCAAACAAAGCTGAACACCAAATTTAATTGGACATGAACAAGTACGCCGACGAAGTGATGACGTTTACGGTTTCTTTTGAAGGGAATTCCAGAGAATGAAATGCAACGTGTTTGACTAGCTAATCTTATCAATGTTGAAATGTTTGTAGTTTTTATGTTCTAATGTTATCGGTGTTGTTAATGTTGAAATGAACATTATTGACATTAATTTAATTCTATGAACTGCATATCGCATGACCTGTGAAACTGTGTCCAGTGCTGTAGATTTAATAAA

Function

symbol description
tmeff1b Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEFF1 (transmembrane protein with EGF like and two follistatin like domains 1).

GO:

id name namespace
GO:0008150 biological_process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000082_03966490_03976509.mRNA True 1663 mRNA 0.42 9 3965759 3976509

Neighbor

gene id symbol gene type direction distance location
CI01000082_03960633_03964447 MURCB coding downstream 1312 3959741 ~ 3964447 (-)
CI01000082_03890139_03903991 NA coding downstream 61712 3890139 ~ 3904047 (-)
CI01000082_03855645_03863349 NA coding downstream 102410 3855433 ~ 3863349 (-)
CI01000082_03793674_03817588 SLC4A2B, SLC4A2 coding downstream 148171 3793348 ~ 3817588 (-)
CI01000082_03787965_03790090 NA coding downstream 175669 3787640 ~ 3790090 (-)
CI01000082_04002837_04008950 BRAFLDRAFT_115150, CDK5 coding upstream 26048 4001099 ~ 4009112 (-)
CI01000082_04009852_04017883 ABCB8 coding upstream 33206 4009715 ~ 4017955 (-)
CI01000082_04046715_04059602 ASIC1C, ASIC3, SCNN1A coding upstream 69916 4046425 ~ 4061254 (-)
CI01000082_04076831_04078585 NA coding upstream 100031 4076540 ~ 4080130 (-)
CI01000082_04114096_04116464 NA coding upstream 136848 4113357 ~ 4116464 (-)
G297388 NA non-coding downstream 15960 3948427 ~ 3949799 (-)
G297387 NA non-coding downstream 20276 3944815 ~ 3945483 (-)
G297386 NA non-coding downstream 21955 3943574 ~ 3943804 (-)
G297385 NA non-coding downstream 23247 3942193 ~ 3942512 (-)
G297384 NA non-coding downstream 24545 3940990 ~ 3941214 (-)
CI01000082_04166987_04239812 AGAP3 non-coding upstream 192975 4166065 ~ 4239812 (-)
G297445 NA non-coding upstream 226008 4202517 ~ 4203052 (-)
G297438 NA non-coding upstream 270894 4247403 ~ 4250253 (-)
G297440 NA non-coding upstream 301631 4278140 ~ 4280374 (-)
CI01000082_03329243_03330818 NA other downstream 635008 3329134 ~ 3332093 (-)
CI01000082_02829738_02840354 NA other downstream 1126792 2829738 ~ 2840354 (-)
CI01000082_02639529_02641582 NA other downstream 1323908 2638271 ~ 2641851 (-)
G296906 NA other downstream 1531847 2402819 ~ 2433912 (-)
CI01000082_00689066_00690051 NA other downstream 3275325 688512 ~ 690121 (-)
CI01000082_04332255_04333022 NA other upstream 344001 4330173 ~ 4334359 (-)
CI01000082_04698358_04700580 NA other upstream 721693 4697533 ~ 4700580 (-)

Expression


Co-expression Network