CI01000082_04046715_04059602 (ASIC1C, ASIC3, SCNN1A)


Basic Information

Item Value
gene id CI01000082_04046715_04059602
gene name ASIC1C, ASIC3, SCNN1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 4046425 ~ 4061254 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000082_04046715_04059602.mRNA
AGATGAGAATGTATGAAAATACTTGCCTGGAGTTGTTATTTCAGTGCGTTAACAGCCTGAAAACATGGTAGATTGTACATGATAACCTCTGAGATAACTTCAAGATTTCAGGAAAAAGATTAGATTGAATTTTTGCCTTCAAAAGTTCAAATGAAAAAGAAAAACTCATATTTTCAATGTGATCTCAGACTTTATGGACCCTACTGTACATATAGACATTAATATATATCATACATCAATAAAATAGCAGTTTATGATGTCCTACAGGTGTCAGCACAGGGTTTTGTAAAGGAAAGATCAGCTCTCTATCCACTTTTTTTCATCATACACAACATAACCAACAGTTTACCTGACCCAATAATGCACATGTACGTTTATACTATGATATAACTGATATATGTCCCATGAGAATACTATTAATGTTAATGTAAAATAAACAACTGTGAAAGACCCCCAAAAGCATCAATGAAGACAGAAAAAACAGGTCTGATAAATAACATGACCTCCAGCAATCTCTCTCTTAGTTGGTCATTTTTCTACTTTAATACAAGAAATATTCAAGCTTCTGGGTTTCCGGATTCAGGAATGCAAGAAGCAGGGACAAATGGATCTATATGCCTGCTGCAAATCCATCGACAGAATAATTTGAGCGGAGCGGGAGGGGCTCAGCGCTCTCACACAAAGGGGAAAGCAACAAGAATCTGCAGACAGCCTCACATAGTTGTTCTCTACAAAAAAAAATGAAGCCGAAGAAGAGAGAAGAGGTGAAAGATGAGAGAAAAAACTCAATCTGATCTGTTCAAACGGCTTCACTGAAAGACAGATCAACCTGAGGATCCTGTTGAAACTACGCCGTGAATGAGATTGACATAGGGTGTATTTATCTTAATGAGCTTTGTTGGATCACAACTTGGTAATGTACAAATCTTTTCTTTTTTCCTTTTATTTATTTATTATAGTTTTCCTTTGCACGGACTAGCAATGATATAGACTATTAAAGCTCAATGAATTCATTGGGATTTTGGTAATGCTGTACAATAAGGCTCAATTTGTTAACATTAGTGAACATGAACTAACAATGAAACATACTTCGAAATCATTTATTAATCTTAGTTAATATATTAAAGTCAACATTTACTAATACATTATTAATATTAAAAGTTGTGTCTGTTAGTATTATTTAAGGAATCCGAGTTAACATGAACTAACAACTTATTTTTATTAACTCACATTAAAAAAGATTAATAAATACTCTGATAGCACACGTACATCTCGGAGACGTCTATTTGATGTGCATGTTTACATCTGGAAGACGTATTTTTTAGAGTATTTGCTCGTCTACAATACATCTATATTTCCTGTCAAACGTCAAATAGACATTTAGAAAATGTCTTTAAGATGTTTATGATTTAGAATATATGTAAAACTGCTCTATGTAAATCTTAAAGATGTCTATCAGATGTTTGTAAAGAGCAGATGCTTTCCAGATGAAGTGATCTTTAGTTAACGTTAGTTAATGCATTATCTAATGGGACCTTATTGTAAATTGTTACCGGGATTTATTTTATTGCTGGTTTGATTCATGTGATCATCATCAATCACAGGATCATGTTTCCACATTGAGACTGAATTTGAAAGAGTTTAACAGCACTATGGAGGAGACGTCCGCATCCAATCAGGAGGCAATAAACAAAGACTCTCTGATGGATGATGCCAAGAGACGCAGCAGCCGGAGGAGACTCAAAATGACTTTAACCCACAGCGCTAAGGATGTTACAACCTCGTTTGTTCTTAGAACAAAAGTCCATGGGCTGAAACACGCATTCTCCCCACACAAATCTAAAATCCATCGCTTGTTTTGGCTCCTGGCCCTCTTTGTTTGCCTGGGGCTCCTCTTCACGTGGTCGTGGAATCGAATCCTGTATCTTCTTTCCTACCCAGCCGTGACCAAGATCTACATGGTTTGGACTCGCAACATGACATTTCCGGCTGTTACGTTCTGCAACCAGAACCTCTTCCGCGTGTCCAGCCTCACCAAAGCAGACGTCTACCACAGCGGCTACTGGATGGACATCATGCACCTGAACCACACGGTCAACCGACAGAGCGTTTCTATGCTCAAACACAGTCGACACGGTGAGAGGTTGCTGCATCTTCTCGACTTCTCCAACTACAGCCCGCCTCCTGACTACCAGCTCAACACCACGGAGATGATTGACAGGCTGGGCCACCAGTTAGAAGACATGCTGCTGGAATGCAGGTTCCGGGGTGAAAACTGCACTTACAAGAACTTCAGCCCTATTTACACCAGATACGGGAAATGTTACACATTTAACTCTGGTCTAGATGGAAACCCCTTGCTGACGACTTTAAAAGGCGGAACAGGAAATGGGCTGGAAATCATGCTGGATATTCAACAGGATGAGTACCTGCCAGTTTGGGGTGACACAGACGAAACCTCGTATGAAGCAGGCATCAAAGTTCAGATCCACAGTCAGGATGAGCCGCCCTTCATAGATCAGCTGGGATTTGGTGTGGCCCCTGGTTTTCAAACTTTTGTGTCTTGTCAGCAGCAACTGCTCCAGTATCTTCCTCCGCCATGGGGCGACTGCAGATCCACCCCTATGGACTCTGAATACTTCTCCACCTACAGCATCACAGCCTGTCGCATCGACTGCGAGACCCGCTACCTGCTAGAAAACTGCAACTGCAGAATGGTGCACATGCCAGGCACCTCTACCGTCTGCACACCCGAGCAGTACAAAGACTGTGCTGATCCAGCTTTAGATTTTCTTGTGGAGAAGGACAACGATTACTGCGTTTGCGATACGCCATGCAACATGACTCGATACGGTAAAGAGCTGTCCATGGTGAAAATACCCAGCAAGGCTTCTGCGAAATATCTTGCCAAGAAGTTCAACAAAACAGAACAGTACATTGCGGACAACATATTGGTGCTGGATATCTTTTTTGAGGCTCTGAACTACGAGAAAATTGAACAAAAGAAGGCCTATGAAGTTGCTGGATTACTTGGTGATATTGGTGGTCAGATGGGTCTGTTTATAGGAGCCAGTGTCTTGACAATATTGGAGATATTTGATTATTTGTATGAGGTTTTTAAGGACAAAGTGCTGGGATATTTTCTACGCAAGAGACGGCCACATCGGAGCGCTAGTGACAATCTGGTAATTGTGCTTCCTGTGTTGCTCTGAATGTGAGCATGTTGGTTTTGTTCATATTTTCAGTGTTTTTATTTTTTGTTTGGATTTTACTCTTGAATGCTGCATGCATCTAGTTGCCTTTTGTCTTTGGCTCAAATTCTGGGAAATGATTGATGAAGATGGCCTTTCCGCAAAAGACATAATCTTGTTTGAATATGGACAAATATCAGACCAGAAATGGGCAAGTTTTAGAAATGTCTATCACCCTTCGCTTGTGACAAACCTTGTATCAGATTTAGATCTGACAATGACCAATTAGCAAATCTATGCTTTTCATTAAA

Function

symbol description
asic1c Enables ligand-gated sodium channel activity. Predicted to be involved in cellular response to pH; protein homotrimerization; and sodium ion transmembrane transport. Predicted to act upstream of or within sodium ion transport. Is integral component of plasma membrane. Is expressed in gill. Orthologous to human ASIC1 (acid sensing ion channel subunit 1) and ASIC3 (acid sensing ion channel subunit 3).
asic3 Predicted to enable acid-sensing ion channel activity. Involved in sensory perception of sour taste. Predicted to be located in plasma membrane. Predicted to be integral component of plasma membrane.
scnn1a Enables WW domain binding activity. Contributes to ligand-gated sodium channel activity. Involved in multicellular organismal water homeostasis; sodium ion homeostasis; and sodium ion transmembrane transport. Located in several cellular components, including apical plasma membrane; ciliary membrane; and extracellular exosome. Is integral component of plasma membrane. Part of sodium channel complex. Implicated in Liddle syndrome; autosomal recessive pseudohypoaldosteronism type 1; bronchiectasis 2; and pseudohypoaldosteronism. Biomarker of neuroblastoma.

GO:

id name namespace
GO:0044736 acid-sensing ion channel activity molecular_function

KEGG:

id description
K04829 ASIC1, ACCN2, BNAC2; acid-sensing ion channel 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000082_04046715_04059602.mRNA True 3502 mRNA 0.40 9 4046425 4061254

Neighbor

gene id symbol gene type direction distance location
CI01000082_04009852_04017883 ABCB8 coding downstream 28470 4009715 ~ 4017955 (-)
CI01000082_04002837_04008950 BRAFLDRAFT_115150, CDK5 coding downstream 37475 4001099 ~ 4009112 (-)
CI01000082_03966490_03976509 TMEFF1B coding downstream 69916 3965759 ~ 3976509 (-)
CI01000082_03960633_03964447 MURCB coding downstream 81978 3959741 ~ 3964447 (-)
CI01000082_03890139_03903991 NA coding downstream 142378 3890139 ~ 3904047 (-)
CI01000082_04076831_04078585 NA coding upstream 15286 4076540 ~ 4080130 (-)
CI01000082_04114096_04116464 NA coding upstream 52103 4113357 ~ 4116464 (-)
CI01000082_04166987_04239812 AGAP3 coding upstream 104811 4166065 ~ 4239812 (-)
CI01000082_04306692_04308566 NA coding upstream 244852 4301266 ~ 4309336 (-)
CI01000082_04332255_04333022 NA coding upstream 270051 4330173 ~ 4334359 (-)
G297388 NA non-coding downstream 96626 3948427 ~ 3949799 (-)
G297387 NA non-coding downstream 100942 3944815 ~ 3945483 (-)
G297386 NA non-coding downstream 102621 3943574 ~ 3943804 (-)
G297385 NA non-coding downstream 103913 3942193 ~ 3942512 (-)
G297445 NA non-coding upstream 141263 4202517 ~ 4203052 (-)
G297438 NA non-coding upstream 186149 4247403 ~ 4250253 (-)
G297440 NA non-coding upstream 216886 4278140 ~ 4280374 (-)
CI01000082_03329243_03330818 NA other downstream 715674 3329134 ~ 3332093 (-)
CI01000082_02829738_02840354 NA other downstream 1207458 2829738 ~ 2840354 (-)
CI01000082_02639529_02641582 NA other downstream 1404574 2638271 ~ 2641851 (-)
G296906 NA other downstream 1612513 2402819 ~ 2433912 (-)
CI01000082_04698358_04700580 NA other upstream 636948 4697533 ~ 4700580 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_023595 asic1c coding NC_007135.7 CM002908.2 33868109 ~ 34034931 (-)