XLOC_010787


Basic Information

Item Value
gene id XLOC_010787
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 30504516 ~ 30519239 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021097
GTTTTGCCGCTGGAGGGCGATCTCAGTCAACCCAAATGCGTCTTTCGAAGCTTTTATGTGAAAAGGTTGCTTTTACCGAAATCACTTGACTTTGTCAAACAAAATACCACAGCGTTTCTCTTTCCAAAAAAGTACACGAGACGAcataaagGAGGAGGCGTGGACACATGGTGGGCAATGACGACTGCACTTTTCTCCAAACAGACCAGCACTACACACTATGAAGTAGAGGAGAAAGCACTGTGTAAAAGCAGCTCTAATCTGACATGAGTTCTTAGAGATGCAGACAACCATATAAACTCACTGTGTTGACACTGAGCTCCCCAAAATCCCGGTTTGCACAAGCAGGTTCCTGTATGTGCCTGACAGGTGGCGCTGTTGAGGCAGGAGCAGGTCTGGTTGCACTGAATTCCCCATGTTCCTTCTGGACACTGCTGTGTACAGCGCACACCTGCAGACCACCAGATGAGTTCACTCGAAAAACACAGTCCTACTTCGAATTTGTTAGATTTTTAAGTGTGTTTGCCTCATGCATTTTAAAAGCACTAGTCaatttctaaatgattttgatgTCTAATGAAActggtgggggaaaaaaaaagtagctgggtttgaatatgtgctttataagtcCAACATGTGCTCTAATAAATATAGCCATTTTGAATGGGATACACAGcaggaaaaataagtattgaacacatcaccatttttctcagaaaacattttaaaggtgcagttgacttgaaattttccacAGATTTGGTAACAactaaataaatccatatatcaaagaaaacaaatctaattagattacaaattaagttatgcaaaATCACACAGGGAAAACGttctgaacacatgaagaaatggaggtgtagaaatctctcagtagttattcagcaaccctatGCCCTTTGTCAGTGTaaaatcagctgcttcagtccaacatctacattatcaggataaTGAAACCAGGGTGGGCATTTCAGAAAGATAAGGATCCACAACACATCCAagcaaactctcaaatgctttcagagaaaaaaaatcaagctgtagaatggcccagccaatcacctgacttgaatccaatataaaatacaaaataaagatccgatttgatagacgagacccacagaaccatcaagatttttacactgctgaagtctgtgaaaaatccacacctgagcaattcatgtgacttcattttccACATGAGAGGCACCTTTAAGCGGCCaacaccaaaaaaaacaa
>TCONS_00022177
TCTCAGTCAACCCAAATGCGTCTTTCGAAGCTTTTATGTGAAAAGGTTGCTTTTACCGAAATCACTTGACTTTGTCAAACAAAATACCACAGCGTTTCTCTTTCCAAAAAAGTACACGAGACGAcataaagTCTTTGGCAGTGATTTTAGAGAAGAGTCTTTGGGTTTGGAGAGAAAAGGATCAGTTTGGCAGTCTGCGTGGCGATGGTGAAGGTGGTCTGCGCACCGGGGGCAAGTCATAATGCCCAGGAATGTGGCTGTTGATGGGCAGATCATAGTGATTCTGAAGTTCCTGTTCTTCAGCATTGCTAAGGGAACAGTGTCCTGAAATACAGCGAACAAACACATTGtaaacagtacagtacagtaacttattacattaaaaatgacattattaag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021097 False 1257 lncRNA 0.40 2 30504516 30519239
TCONS_00022177 True 399 lncRNA 0.42 2 30518141 30519219

Neighbor

gene id symbol gene type direction distance location
XLOC_010786 pdia7 coding downstream 70237 30422481 ~ 30434279 (-)
XLOC_010785 cct3 coding downstream 83241 30408697 ~ 30421275 (-)
XLOC_010784 NA coding downstream 582746 29919595 ~ 29921770 (-)
XLOC_010783 tnfaip8l2b coding downstream 789976 29698565 ~ 29714540 (-)
XLOC_010782 scnm1 coding downstream 814304 29685557 ~ 29690212 (-)
XLOC_010788 lmna coding upstream 1118 30520357 ~ 30570161 (-)
XLOC_010789 mc5rb coding upstream 63750 30582989 ~ 30584279 (-)
XLOC_010790 ldlrad4b coding upstream 102445 30621684 ~ 30655980 (-)
XLOC_010791 BX005347.1 coding upstream 129148 30648387 ~ 30648504 (-)
XLOC_010792 ptk2ab coding upstream 216187 30735426 ~ 30870170 (-)
XLOC_010626 CR392024.2 misc downstream 9609341 20895112 ~ 20895175 (-)
XLOC_010781 NA non-coding downstream 853791 29647214 ~ 29650725 (-)
XLOC_010779 NA non-coding downstream 965563 29531348 ~ 29538953 (-)
XLOC_010777 BX248517.1 non-coding downstream 974154 29515971 ~ 29530362 (-)
XLOC_010769 CR938717.1 non-coding downstream 1348664 29155738 ~ 29155852 (-)
XLOC_010798 NA non-coding upstream 647747 31166986 ~ 31169382 (-)
XLOC_010800 NA non-coding upstream 724541 31243780 ~ 31244681 (-)
XLOC_010802 NA non-coding upstream 865844 31385083 ~ 31407686 (-)
XLOC_010805 CR855311.2 non-coding upstream 989588 31508827 ~ 31511707 (-)

Expression


Co-expression Network