CI01000082_04332255_04333022


Basic Information

Item Value
gene id CI01000082_04332255_04333022
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 4330173 ~ 4334359 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000082_04332255_04333022.mRNA
TGAATCTACTTGTTGTGTGTGTCTGTGAACGAGTGAACAATTATAAGCATTAAACTGTCAAGCAAAAATATCAGGTTACATAATATACTGAAGCATCATTCGCTTTATACCAACACCACCCAAACATCCAATCGAATATCACTCCCCCGTTTCAAACAGTTACGTGATGTGTGACGTCTCAGTGGATGGCAGTGATGTCCGAATCGTTCTTCTGAACCGGATCTTTTTAATGATTCGACTCGCGAAGCGTTTGGAAATCACTGTACGGGACTTTGACTGGGAGGCAGGAACAGTAATATACGTTATACTATATTTAACAATTAAAGTGAGTCTAATAATGACATTATTGTTAACAATAAACAAAACAGCATTTGGAATTAAAGCTTTGAGAATATGAAAACAACACCGTGACTGAGATATAAACAATAGCTAACCGATTGAACGGACTGTTTGTCTATCACCATATGTAAAGATATTATATATTGTGGCGTCTACGCTAATTAAAATAAATTTAAATTGACTGCACATCTATTTTTAAATATCACCGTTTATACTGGTTAAAGGTGCAGTCAGTCTCACCGACCGTTGCTCTGCAACTGACCAACGGAGAGCATGGTTTGAAATAACTTCGGCTCTTCATACAGAGCTACGCTATTAATTGACATTTTTGTACTCGACATTTTCCTGAAATATCGCTAATGTGACCTTAACGTGTATAAACAATGAGTTTACTGTACAAATTAATGAAAAATACCGCGTAGGGGTGTTCTGTGAACACTTTTGAGCAACAACTCAAAAGAATAATTCATTCGACTCTTTGAACTGGTTCGCTGATCGAGCCGATTCGCTAAAAGAATCGGACTTTCCACATCTAGTGGATGGAGGTGGGGGCCGGGGAGGGACTTCTTGGACCAAAAGGGGATTCAAACGTGTTTATGACTTTAGAGTAGAACCGTCGCATTCAGTCAGTCAATGGACTCGGGCGCATTGCGATAACCGGTCTCATTGTGTTCGCTTCAGGCTGGGAAGCAAGCGAGATTCGGTCCAGAAGATCGCCCAAAACAAAGGTGTGTCCATCTGAAAGACATTCATTGTCAAAAAAGGACAGGACACGCGCAAAAGAGCGAGATCGTCGCTGGGAACAATGATGCTGATTGAAGTTTTGGTATTATGAGCAAGGCGCGCGGATTTGTTGGAAACCCATTGATGCGTCACCTATAGTTGTTATCATTCTTTATCAGATCAGAGTGTGCAGTGCGGATTCGTCGCGCGCTCTCCAAATCATTCCAAACGCGGCATTTCTATTATTCCCGTGAGCGGTTCCAAAATCCACAACGATGAATTACCAATCGAGCGTCCCGGTTTCGGTGTCAGTGTCCGGGATCTCTCAGCAGTCCCAGCCCGCTATGCCCACCCCGGGAACGGTACCCACACCGGTGCCCGTTCCTCAGCCGATTAACCCTCAGTTCGGATCCGGATCGTCCGGCAGCTCCGGGGCGGGTCAGTTTGGCTCGGGAACCGTATCAGGCCCTGCAGCGCAGTCCGGCTCGTCGGGCTCCCAGTTCGTTTTGTCCAACTCAGCAGCCATCAGAGGCGAGATCCATCGGTTCGAGTCCGTCCACCCGAACATTTATGCAATATACGACCTGATCGAGCGCATCGATGACCTGGCCCTCCAGAACCAGATCCGCGAGCATGTGATCTCTATTGAAGTTGGATTGTTTGGGAATGAAGAGAGGAGATCTTGCAAAACCGTGAGCTTCCAAAACGCATTAGTGTGTTATGGATGCAAATTAAATTGTGAAGAAAAGATTTGTGGCTCTCTGCATTAATATTGACACTCCAGTCAGATGTGATTTTCACAGTAGATCTTAATGCAGATTTGATTGTTTCATTATCAGAAGCTCTTCTGGAAAAATGCTTTCCGAGGTTCCTCTCATCCACTGTTTGTGCATCAGTCGTTCATTTGGGTTAAGTGAGCTTTTCGATTGATTATGTCAAAGACATTGACTCTGACAATCTTTACAACAGATCTGACCTACACTGTAAATAGAATTGTTGGTTTAACTTAAAAAAGTAAGTTACCAGGTTGCCTTAAATTTTTGAGTTCATTGAAATTAAAAATTTGAGTTAATACAATGAAGGCGATTGGTTTAATCAACAGAAACTCAAAATGTTATGTTATCTGAACCACATTACTTATTAAAGTTGATTTGACAAAAGAAAAAATGTTGTGATGAATCATGAATCAGTGATTGGCTAATATTAATGGTTTTAAAGACAAAAGCTGATGGTGCATGCAAACTGGGGAACGTATCTAGGCATCACAAATCATTTATCTACATTATGTATAATTAAGGGGGCATTTGATAGCCGTGGATCACCAATATGAATTCTGAACACTAAATATCTTAAAGTGCAATGCTTTTTGTAGTTTAATGATACATAATGAGATGGAACACTAGCATTTGGAATTGGTTTTGTGTAAAGAGTTATGTTGTCAAAATATGTTTGGTTTGCTTTGAAATATTCTTGGATTGCACTCAACATTTAGTTGGATTTTTTGGGATTGTTTGAGATCTTGCATAACCCTGAGCTTCCAGAACAACTCCTCAATTTGAGTATGAGAATGTGCATCAAAGATTTGTGGCGTTTTGTGTTAATATTGACACACCAGTCAGATGTGATTTTCATAGCAGACCTTAATACAGATGTGATTGTTTCATAATGAGAAGCTCTTCTGCAAAACATTTGTCAGCATCAGTCGCTCATCTCGAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000082_04332255_04333022.mRNA False 2782 mRNA 0.41 2 4331305 4334359

Neighbor

gene id symbol gene type direction distance location
CI01000082_04306692_04308566 NA coding downstream 21969 4301266 ~ 4309336 (-)
CI01000082_04166987_04239812 AGAP3 coding downstream 91493 4166065 ~ 4239812 (-)
CI01000082_04114096_04116464 NA coding downstream 214841 4113357 ~ 4116464 (-)
CI01000082_04076831_04078585 NA coding downstream 251175 4076540 ~ 4080130 (-)
CI01000082_04046715_04059602 ASIC1C, ASIC3, SCNN1A coding downstream 270051 4046425 ~ 4061254 (-)
CI01000082_04374470_04376138 NA coding upstream 39978 4374337 ~ 4378723 (-)
CI01000082_04476837_04498244 SNTG1 coding upstream 142004 4476363 ~ 4498244 (-)
CI01000082_04569902_04593680 NA coding upstream 235382 4569741 ~ 4595609 (-)
CI01000082_04604289_04607362 UBE2V2, UB2V2 coding upstream 269473 4603832 ~ 4607362 (-)
CI01000082_04610319_04618566 MCM4.L, MCM4.S, MCM4 coding upstream 275841 4610200 ~ 4618566 (-)
G297450 NA non-coding downstream 19413 4310332 ~ 4311892 (-)
G297440 NA non-coding downstream 50931 4278140 ~ 4280374 (-)
G297438 NA non-coding downstream 81052 4247403 ~ 4250253 (-)
G297445 NA non-coding downstream 128253 4202517 ~ 4203052 (-)
G297465 NA non-coding upstream 57302 4391661 ~ 4409294 (-)
G297556 NA non-coding upstream 256990 4591349 ~ 4591851 (-)
G297559 NA non-coding upstream 261366 4595725 ~ 4595936 (-)
G297561 NA non-coding upstream 262678 4597037 ~ 4597378 (-)
G297497 NA non-coding upstream 284880 4619239 ~ 4619480 (-)
CI01000082_04002837_04008950 BRAFLDRAFT_115150, CDK5 other downstream 322193 4001099 ~ 4009112 (-)
CI01000082_03329243_03330818 NA other downstream 1000554 3329134 ~ 3332093 (-)
CI01000082_02829738_02840354 NA other downstream 1492338 2829738 ~ 2840354 (-)
CI01000082_02639529_02641582 NA other downstream 1689454 2638271 ~ 2641851 (-)
G296906 NA other downstream 1897393 2402819 ~ 2433912 (-)
CI01000082_04698358_04700580 NA other upstream 363843 4697533 ~ 4700580 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_023601 NA non-coding NC_007135.7 CM002908.2 34883901 ~ 34949036 (-)