G294664


Basic Information

Item Value
gene id G294664
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 25312 ~ 26966 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU334545
GGGGCTTGCCATTCTCCGCGTTTCACCACTCCGAAGGAGCCGTCTCCCAGTTTCTCGTAGAGGGTGAGGTCTCTGTCACTGATGAGGCAGGTGAGATCAGCTGGCTGACCCTCTGGTTGAGCTGATGATGGGGATGAGCTGCGGAACACCACTGGGGTCTGGGAATCTGAGTCAGGCCGCTTCCCGGTGAACACCTTGCTCACCCATGACTTCCGTTTGCACATGGCCCTTCTCCTTTTTACTGCCTCCCACAGCCGTCTCTGACCTGCAGAGCCTGGTCGGCCCATGCCGATCTTTTCAAGGTCCTCATTTTTGACATAGTCAAAGTGTGAGAGACGTGTGACATTGAGGTCATCACGGATACGCAGAAAATATTGCTGGAGCTGCACATCGGTGAGCAGCTCCATGAGCCACTCTGTGCCTTCGTCAGACTGCATGTCTCCACCGTCCGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU334545 True 452 lncRNA 0.56 3 25312 26966

Neighbor

gene id symbol gene type direction distance location
CI01000082_00127677_00131998 AND1 coding upstream 100130 127096 ~ 131998 (-)
CI01000082_00135087_00136976 MYEOV2.S, MYEOV2, COPS9 coding upstream 108002 134964 ~ 137769 (-)
CI01000082_00137937_00138124 NA coding upstream 110841 137461 ~ 138124 (-)
CI01000082_00139607_00140545 APODB coding upstream 112484 139450 ~ 140647 (-)
CI01000082_00159413_00161182 LRRC31 coding upstream 132290 159256 ~ 161182 (-)
G294660 NA non-coding downstream 6046 18947 ~ 19266 (-)
G294669 NA non-coding upstream 12788 39754 ~ 39991 (-)
G294681 NA non-coding upstream 66931 93897 ~ 94809 (-)
G294684 NA non-coding upstream 69663 96629 ~ 96844 (-)
G294718 NA non-coding upstream 110495 138424 ~ 139202 (-)
CI01000082_00597462_00611609 ZMYND11 other upstream 578973 596319 ~ 611625 (-)
CI01000082_00678125_00678798 NA other upstream 613047 677628 ~ 678839 (-)
CI01000082_00666387_00667509 NA other upstream 639150 665937 ~ 667840 (-)
G294821 NA other upstream 643518 670484 ~ 671462 (-)
CI01000082_00689066_00690051 NA other upstream 661894 688512 ~ 690121 (-)

Expression


Co-expression Network