Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_010792 |
| gene name | ptk2ab |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 30735426 ~ 30870170 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| ptk2ab | Predicted to enable non-membrane spanning protein tyrosine kinase activity and signaling receptor binding activity. Acts upstream of or within with a positive effect on midbrain-hindbrain boundary morphogenesis. Acts upstream of or within lens fiber cell morphogenesis. Predicted to be located in cell junction; cell projection; and cytoskeleton. Predicted to be active in dendritic spine and focal adhesion. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Is expressed in eye; notochord; segmental plate; somite; and vertical myoseptum. Human ortholog(s) of this gene implicated in leiomyoma; lung small cell carcinoma; and pulmonary hypertension. Orthologous to human PTK2 (protein tyrosine kinase 2). |
| id | name | namespace |
|---|---|---|
| GO:0045087 | innate immune response | biological_process |
| GO:0021555 | midbrain-hindbrain boundary morphogenesis | biological_process |
| GO:0042127 | regulation of cell population proliferation | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0030155 | regulation of cell adhesion | biological_process |
| GO:0038083 | peptidyl-tyrosine autophosphorylation | biological_process |
| GO:0070309 | lens fiber cell morphogenesis | biological_process |
| GO:0001525 | angiogenesis | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0007169 | transmembrane receptor protein tyrosine kinase signaling pathway | biological_process |
| GO:0007172 | signal complex assembly | biological_process |
| GO:0007173 | epidermal growth factor receptor signaling pathway | biological_process |
| GO:0031234 | extrinsic component of cytoplasmic side of plasma membrane | cellular_component |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0005925 | focal adhesion | cellular_component |
| GO:0043197 | dendritic spine | cellular_component |
| GO:0005102 | signaling receptor binding | molecular_function |
| GO:0016740 | transferase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004672 | protein kinase activity | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| GO:0004713 | protein tyrosine kinase activity | molecular_function |
| GO:0004715 | non-membrane spanning protein tyrosine kinase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-020114-1 | Predicted to enable non-membrane spanning protein tyrosine kinase activity and signaling receptor binding activity. Acts upstream of or within with a positive effect on midbrain-hindbrain boundary morphogenesis. Acts upstream of or within lens fiber cell morphogenesis. Predicted to be located in cell junction; cell projection; and cytoskeleton. Predicted to be active in dendritic spine and focal adhesion. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Is expressed in eye; notochord; segmental plate; somite; and vertical myoseptum. Human ortholog(s) of this gene implicated in leiomyoma; lung small cell carcinoma; and pulmonary hypertension. Orthologous to human PTK2 (protein tyrosine kinase 2). |
| ensembl_id | ENSDARG00000004672 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00021107 | False | 5664 | mRNA | 0.43 | 33 | 30735426 | 30833519 |
| TCONS_00021109 | False | 6486 | mRNA | 0.44 | 33 | 30735426 | 30847192 |
| TCONS_00021108 | False | 6468 | mRNA | 0.44 | 32 | 30735426 | 30847192 |
| TCONS_00021111 | False | 6015 | mRNA | 0.43 | 33 | 30735426 | 30864824 |
| TCONS_00021110 | False | 6036 | mRNA | 0.43 | 34 | 30735426 | 30864824 |
| TCONS_00021112 | False | 5865 | mRNA | 0.43 | 34 | 30735426 | 30869832 |
| TCONS_00021113 | False | 5753 | mRNA | 0.43 | 32 | 30735426 | 30870170 |
| TCONS_00021114 | False | 3874 | mRNA | 0.49 | 32 | 30737278 | 30869732 |
| TCONS_00021117 | False | 1053 | lncRNA | 0.51 | 7 | 30737535 | 30753957 |
| TCONS_00021115 | False | 885 | processed_transcript | 0.51 | 5 | 30737535 | 30774911 |
| TCONS_00021116 | False | 3299 | mRNA | 0.50 | 30 | 30737673 | 30826712 |
| TCONS_00021118 | False | 845 | processed_transcript | 0.55 | 9 | 30740651 | 30774926 |
| TCONS_00021119 | False | 722 | lncRNA | 0.43 | 3 | 30748045 | 30753937 |
| TCONS_00021120 | False | 645 | processed_transcript | 0.58 | 4 | 30758360 | 30772432 |
| TCONS_00022178 | False | 1339 | lncRNA | 0.50 | 9 | 30758360 | 30788545 |
| TCONS_00021121 | False | 537 | processed_transcript | 0.46 | 3 | 30772169 | 30786112 |
| TCONS_00021122 | True | 808 | processed_transcript | 0.44 | 6 | 30772319 | 30788545 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_010790 | ldlrad4b | coding | downstream | 79446 | 30621684 ~ 30655980 (-) |
| XLOC_010791 | BX005347.1 | coding | downstream | 86922 | 30648387 ~ 30648504 (-) |
| XLOC_010789 | mc5rb | coding | downstream | 151147 | 30582989 ~ 30584279 (-) |
| XLOC_010788 | lmna | coding | downstream | 165265 | 30520357 ~ 30570161 (-) |
| XLOC_010787 | NA | coding | downstream | 216187 | 30504516 ~ 30519239 (-) |
| XLOC_010793 | dennd3b | coding | upstream | 1444 | 30871614 ~ 30885838 (-) |
| XLOC_010794 | dennd3b | coding | upstream | 23570 | 30893740 ~ 30903930 (-) |
| XLOC_010795 | slc45a4b | coding | upstream | 35381 | 30905551 ~ 30932533 (-) |
| XLOC_010796 | gpr20 | coding | upstream | 63079 | 30933249 ~ 30934319 (-) |
| XLOC_010797 | dgat1b | coding | upstream | 78281 | 30948451 ~ 31000727 (-) |
| XLOC_010626 | CR392024.2 | misc | downstream | 9840251 | 20895112 ~ 20895175 (-) |
| XLOC_010784 | NA | non-coding | downstream | 813656 | 29919595 ~ 29921770 (-) |
| XLOC_010781 | NA | non-coding | downstream | 1084701 | 29647214 ~ 29650725 (-) |
| XLOC_010779 | NA | non-coding | downstream | 1196473 | 29531348 ~ 29538953 (-) |
| XLOC_010798 | NA | non-coding | upstream | 296816 | 31166986 ~ 31169382 (-) |
| XLOC_010800 | NA | non-coding | upstream | 373610 | 31243780 ~ 31244681 (-) |
| XLOC_010802 | NA | non-coding | upstream | 514913 | 31385083 ~ 31407686 (-) |
| XLOC_010805 | CR855311.2 | non-coding | upstream | 638657 | 31508827 ~ 31511707 (-) |
| XLOC_010809 | CR855311.1 | non-coding | upstream | 753805 | 31623975 ~ 31628687 (-) |
