G294792


Basic Information

Item Value
gene id G294792
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 553559 ~ 568318 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU334701
CAAAAATATCTGGACACTTTTGTCACACTTAAAAATGCCAATGCATTAATAAAAAATATAAAAACAAGTGGCATTTGCCAAAAAATTTATGCTTTTCTCAGAACTAACTAGATTTTCTAAACAAATTTTTAATTTGAAATGGAATAACTACCCTTTTGTCAAATGTTTGTGCTATATTTCTTCCCACTGATAAAAAATTGTATTTATTGACGCAAAAAAATAATAAAAAATAATAATAATGATAAATAAAATGAAAGACATTCGTGCATTAAGCGTGACTTCAGTGTCCAAATATTTTTTGTCTTAATTTTAAACAATATTTTATATAATTTGAAATTAAATAACTTTCCTCTTGTGAAAGGTTTGACTTGTAAAGTGTTATAAATAAATAAATAAGTGCTACTTTGATTAATATAAAATAAATAATATTTTATGATTAAAAAAAATAATAATAAAAAAATACATTTATACATTAAGCACGACTTGGGGTCACTGTATCGGACTGTGTGGTCCCTATTAATACTCTTATTAATACTCCAAAATATGAGAGAGTTTATAGTATGATAAAAGTATTACATATTATATTATTCTGTTCTAATATATTATAATATTATATTATTATTTTGTTCCAGTATGTTTGTATGCAGATATTTGTCATTATATGTATGGCTGTAGTTAAATATGGTTATATTACCATAAGTAAGGACGTAGAGTGGTTTGCCGTTGGTGTCCATGGTGGTCAGGCAGGGCGCTTTGGGCGAGATGGTCCCCCAGCGTTGCAGTGCAGCTTCCAAAGATGGCGGCCAATTAGTGACCACTCCCAGCGGTTCCCCTCGAATAGCGACCATCTGAGCGCCTTCCGGCCGTGGCTGGTTGGGGTCAGGCTGCTGGACTTCTAGGAGCTCTTCAAAATCATCAACAAAAAAC
>TU334703
GATCTCATCTGTTCGGCACAGCTGAGGAACTCCCTCTGGTTTGACCACACACATCAGAGCTCCTGGCATCACAGTGCCCACATCCTGTACGGTGAGTACGGACAGACGCTCCTCGGAGTCCACTCTGATGACACCGTAACTCAGACCCTGCATAGACAGCACTCCTCGACCTGGCGGCTGGTTACTGTCATCTGTGGGCCTCCTGATGGCCACGGTGAGGGCTTCAGCTGAGCTGGCACATGGACAGATGACCTCTGGCCGTAAACCTTTACTCTGGAAGACATTGAGGAACGCGTCACATGATGAGATGGACCATGGGTTGGATCCGTCGGCAACCACCAGCATGCGCAGGGAGCTCAGGTTGATGTCTCTCTGATCTCGGTGAGCGACTAGAGCCCAGTGCATATCCCTGGACTTGACACAAGCCACTTTACCTTTATATTGACACACTTTCTGGATCCAGGACAGAGGGTTGACTTTCATCAGGGAGTATGGGATGCTAATTACATGCATCATGTTCATGACACTAGTTAGGATTCCGTGCCACAAACCCACATCCTTTTTAAAATCCAATACATTCACTATGATTTCAGCCTCTGTGTATCCACAAGACTGCGTTAGGGCCTGGCAGTGTGTAAGAAGTGCGATCCGTGTCACCGTCACACCCAAAACACTCCCATCTTTACAGGTCTTATACTCTATGTAGGCGGTGTCGTTATTTGCATCTTTGATGTGAGGGAACCAATCGCGTGGTGGCTTGGACAGGTGTTTGGATTCTGTGACGAACCATAGCAGCTTTGGCCATCCTTTGAACTGTGGTATTTCCCCAGTGGGTCCTTTTGGAAGGCCTTTGTGGCAAGCGTCACTGGTCAGAGCCACAGTAACCCCACAACTGCCCAGGAGAAAGCCGATCTGTTGACTTCCTGCATCCTTTCGGGTAAGTGGCACTTCGATAGGTACGGGCACCACCTCTGCCAGAAGGCAGCCGTAAAAGGCGACCATAAAGGCAGCGGGATCGTTGTTGGGGAACACAAGAGCCACCCGGTCTCCTGGTCGGACCATTGGTTCTTGTTTTGTGCCCAGTTTGTGGAGGATGTTGTATGCTACTTTGATGCTCCGAGACCAAAGTTTACCATAAGTAAGGACGTAGAGTGGTTTGCCGTTGGTGTCCATGGTGGTCAGGCAGGGCGCTTTGGGCGAGATGGTCCCCCAGCGTTGCAGTGCAGCTTCCAAAGATGGCGGCCAATTAGTGACCACTCCCAGCGGTTCCCCTCGAATAGCGACCATCTGAGCGCCTTCCGGCCGTGGCTGGTTGGGGTCAGGCTGCTGGACTTCTAGGAGCTCTTCAAAATCATCAACAAAAAAC
>TU334704
GATCTCATCTGTTCGGCACAGCTGAGGAACTCCCTCTGGTTTGACCACACACATCAGAGCTCCTGGCATCACAGTGCCCACATCCTGTACGGTGAGTACGGACAGACGCTCCTCGGAGTCCACTCTGATGACACCGTAACTCAGACCCTGCATAGACAGCACTCCTCGACCTGGCGGCTGGTTACTGTCATCTGTGGGCCTAAAATGAGAAATAAAGATCATATGGAATCACGGTTGTGAATCAAGCTTCTCAGTGATGCTAATGCAATGTAAACCTGAAGAGGAAGCTGATTGGTCCAACTAGTTTTATTGGACAGCTCTAAGCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU334701 False 927 lncRNA 0.31 2 553559 554820
TU334703 False 1366 lncRNA 0.53 13 553559 568318
TU334704 True 327 lncRNA 0.50 2 567806 568318

Neighbor

gene id symbol gene type direction distance location
CI01000082_00445788_00458726 STAG1, STAG1A, STAG1B coding downstream 94833 444474 ~ 458726 (-)
CI01000082_00439306_00442252 MSL2B coding downstream 110725 439159 ~ 442834 (-)
CI01000082_00393974_00398069 NA coding downstream 155183 393923 ~ 398376 (-)
CI01000082_00347180_00377462 FNDC3BB coding downstream 176097 345891 ~ 377462 (-)
CI01000082_00302837_00322352 PLD1B coding downstream 231207 302803 ~ 322352 (-)
CI01000082_00597462_00611609 ZMYND11 coding upstream 28001 596319 ~ 611625 (-)
CI01000082_00666387_00667509 NA coding upstream 97619 665937 ~ 667840 (-)
CI01000082_00678125_00678798 NA coding upstream 109792 677628 ~ 678839 (-)
CI01000082_00689066_00690051 NA coding upstream 120194 688512 ~ 690121 (-)
CI01000082_00691711_00692356 NA coding upstream 123325 691643 ~ 692356 (-)
G294715 NA non-coding downstream 137117 414802 ~ 416442 (-)
G294739 NA non-coding downstream 139789 413538 ~ 413770 (-)
G294737 NA non-coding downstream 141914 411420 ~ 411645 (-)
G294718 NA non-coding downstream 414357 138424 ~ 139202 (-)
G294803 NA non-coding upstream 6898 575216 ~ 576931 (-)
G294804 NA non-coding upstream 9467 577785 ~ 579087 (-)
G294838 NA non-coding upstream 114137 682455 ~ 683048 (-)
CI01000082_00692849_00695595 NA non-coding upstream 125737 692771 ~ 695766 (-)
G294841 NA non-coding upstream 128940 697258 ~ 697524 (-)
G294821 NA other upstream 102166 670484 ~ 671462 (-)

Expression


Co-expression Network