G294803


Basic Information

Item Value
gene id G294803
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 575216 ~ 576931 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU334717
TGAAGAGCACGTGATCCGGGGTGGTCTGAGCTCTCCACTGCAACACCTCAGACAGGAAGAGGAACTATGGGTGGAAAAAGGAAGCCTGTGATGATTATTACAAAATCTGAGATTTAAGTATTTAAGGGAGATTACATGATATTCCCAAAATGTGATAATTGTTGAATCAGAAAACATTAATACACACAGTTTTATTAAAATATTCACATATGAGTAGGATAAACAGGTGGGTGTTAACAAGTCTAATTATAACCTGATTCAATCTATTGTTTTGCCAAATGCAATATTATAAATGAAACATGACATTTGACTATACCTGTTAAAACACAGAATGCTTTTTTTGCAATTAGCAAGACCTATTAAAGTCATTAGTAAGCGGTGCTGGTGTTATCTTAAGGTTGGAAGTGAATGCAGTCGTGTGTTACCTCAACTCCCAGTGTTATTCTCACATCGGATCGCATTCCTCCTCTTAAAAGCATGAAATAAAACTATTTCCATTCACTCAGCGGGCCCGATTTTCATAGGCATGAATGGATGGAAGCAACGAAAAAAAAACAACAACACAAGCTTCGAGGTGTAAAAATGGAAAAGAGTCATGGACGGCTGTGTTTCCTTGAGCAGCGCAGATGGCGGAGGTAACATTTGTTGGTGTCAGACAGCGCATACCCATGCAGGGCTGTAAGGGTGTGAAGGAATGAGCGAAAGAGAGAGGATGAGGAATGCAATGCAAGAGGCAGCAGCCAACAACTGCCATCTTTCAGCCTGAGAGGGCAGCGTAATGGATTGTATTCACGTCGAGGTGGTTGACTGACAGCACAGCAAAACCAAAGACATCAACTCAACACTAACAGCACAAAAAAAACAACCAATCCAGCCATCCCAAACAGAGCCCAGCGTGCAATAATTATTCTAATGGAGTACTCCAGTACGTTTTCCACAAAACTGCTTTTAAAATCCTTACTTTCAAAACAAAAAAGTTTTAGAAGCAGAAAATTGTCAAGTTCTGGTTTGGTGACATAATGTTTTAACAGTTTCCCAGAATGCTCTCTGTAGGGGTTGGGTATGAAACGACTCTGGCTGAGAGGAAGAGGTCTGACAAGCCGTCAGGGGTCAGTTCCTCTACCACAAATCCAGTCGGGACAATTACTGCGTGCCACACAGGGTCCATAACGAATGCTCGGCGAGCACCAAATGTGTGTAATAAGTTGGCCGGTAACTTTATAAGGGGCTGCAACATGTTTAAGTCGAATTGTAAGATTGATTATCTGACTCCCGCTGATGTAAGTGACACAAGCGATTCAAATCCACACCAGCTATTAAATACAAAACATCTGTTGCGAATCACCCATCGTCAAGAAACCTGGAAAATTTACCATCAGAGGTTTAATTAAGAGGCCTAAAGTTATCCATGTGGTGAAAAGTGTGGAATATTCCAAACATTAAGCCACCAAAATGAAAACACAGAGAAGAAAATCAAAATCTGCCTTCAAATTTTTTGTGACAGATGCAGAAGAATGAATCATCTCATATATTTCATGCTGAGAAAATG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU334717 True 1549 lncRNA 0.41 2 575216 576931

Neighbor

gene id symbol gene type direction distance location
CI01000082_00445788_00458726 STAG1, STAG1A, STAG1B coding downstream 116490 444474 ~ 458726 (-)
CI01000082_00439306_00442252 MSL2B coding downstream 132382 439159 ~ 442834 (-)
CI01000082_00393974_00398069 NA coding downstream 176840 393923 ~ 398376 (-)
CI01000082_00347180_00377462 FNDC3BB coding downstream 197754 345891 ~ 377462 (-)
CI01000082_00302837_00322352 PLD1B coding downstream 252864 302803 ~ 322352 (-)
CI01000082_00597462_00611609 ZMYND11 coding upstream 19388 596319 ~ 611625 (-)
CI01000082_00666387_00667509 NA coding upstream 89006 665937 ~ 667840 (-)
CI01000082_00678125_00678798 NA coding upstream 101179 677628 ~ 678839 (-)
CI01000082_00689066_00690051 NA coding upstream 111581 688512 ~ 690121 (-)
CI01000082_00691711_00692356 NA coding upstream 114712 691643 ~ 692356 (-)
G294792 NA non-coding downstream 6898 553559 ~ 568318 (-)
G294715 NA non-coding downstream 158774 414802 ~ 416442 (-)
G294739 NA non-coding downstream 161446 413538 ~ 413770 (-)
G294737 NA non-coding downstream 163571 411420 ~ 411645 (-)
G294804 NA non-coding upstream 854 577785 ~ 579087 (-)
G294838 NA non-coding upstream 105524 682455 ~ 683048 (-)
CI01000082_00692849_00695595 NA non-coding upstream 117124 692771 ~ 695766 (-)
G294841 NA non-coding upstream 120327 697258 ~ 697524 (-)
G294842 NA non-coding upstream 120817 697748 ~ 697958 (-)
G294821 NA other upstream 93553 670484 ~ 671462 (-)

Expression


Co-expression Network