G295243


Basic Information

Item Value
gene id G295243
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 1346959 ~ 1347268 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU335207
AAAGAATCCGATGAGACACTGGCATAAATCATATTCATGGATGAGCTAATGTATTAAAGATTACTGTAGTATGCAGGGGCGCCATGAAGAGTTTTAAGGGAGGTATGCAAGACATAATTTTGGGCCCCCTTCTTCCAGATGAAAGTTTTTTTTTTTTTTTTTTTTTGACGTTTAATTAGAAATTGAAATAATTTATTAGTTAACATTTATATTATTTCAAGTCCCCCCTCCACCCCTGAAATGCGATTGATTTTAACCCTTTGACGCGTACGATCACAGATATGATCGATCAGACGGACGTGCTCAGTGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU335207 True 310 lncRNA 0.37 1 1346959 1347268

Neighbor

gene id symbol gene type direction distance location
CI01000082_01330784_01334768 OLFM3, OLFM3A coding downstream 11769 1330253 ~ 1335190 (-)
CI01000082_01300876_01305478 TECRL2A coding downstream 41481 1300567 ~ 1305478 (-)
CI01000082_01230554_01235723 NA coding downstream 111220 1229514 ~ 1235739 (-)
CI01000082_01211221_01216257 FBXO45 coding downstream 130466 1210536 ~ 1216493 (-)
CI01000082_01199588_01202126 NRROS coding downstream 143317 1199422 ~ 1203642 (-)
CI01000082_01372750_01454491 COL11A1 coding upstream 25130 1372398 ~ 1456520 (-)
CI01000082_01490700_01492559 NA coding upstream 143384 1490652 ~ 1492559 (-)
CI01000082_01680942_01689756 NA coding upstream 333523 1680791 ~ 1690021 (-)
CI01000082_01796282_01837217 VAV3 coding upstream 448968 1796236 ~ 1837547 (-)
CI01000082_01851564_01866686 NA coding upstream 504259 1851527 ~ 1867273 (-)
G295237 NA non-coding downstream 26227 1320501 ~ 1320732 (-)
G295229 NA non-coding downstream 36423 1310292 ~ 1310536 (-)
G295225 NA non-coding downstream 45012 1301746 ~ 1301947 (-)
G295163 NA non-coding downstream 156393 1189408 ~ 1190566 (-)
G295146 NA non-coding downstream 377117 969604 ~ 969842 (-)
G295261 NA non-coding upstream 65352 1412620 ~ 1413188 (-)
G295274 NA non-coding upstream 112427 1459695 ~ 1459908 (-)
G295323 NA non-coding upstream 121600 1468868 ~ 1469127 (-)
G295314 NA non-coding upstream 132623 1479891 ~ 1481422 (-)
CI01000082_00689066_00690051 NA other downstream 656525 688512 ~ 690121 (-)
CI01000082_00678125_00678798 NA other downstream 664653 677628 ~ 678839 (-)
G294821 NA other downstream 675497 670484 ~ 671462 (-)
CI01000082_00666387_00667509 NA other downstream 679119 665937 ~ 667840 (-)
CI01000082_00597462_00611609 ZMYND11 other downstream 735334 596319 ~ 611625 (-)
G296906 NA other upstream 1055551 2402819 ~ 2433912 (-)
CI01000082_02639529_02641582 NA other upstream 1291003 2638271 ~ 2641851 (-)
CI01000082_02829738_02840354 NA other upstream 1489934 2829738 ~ 2840354 (-)
CI01000082_03329243_03330818 NA other upstream 1981866 3329134 ~ 3332093 (-)
CI01000082_04002837_04008950 BRAFLDRAFT_115150, CDK5 other upstream 2659724 4001099 ~ 4009112 (-)

Expression


Co-expression Network