G296689


Basic Information

Item Value
gene id G296689
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 1697963 ~ 1775915 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU336834
AAGTGTATATACTTTTTAACCACAAATGCTCATCTTGCACTGCTCTGCGATGCGTCACACATTACCTAATCATGTTGGAAAGGGGGAAGTACCACGGTAAGGCGAAAAACTCTTTTATTTTGTAAAGGGCGTTTGACTTAGTCTTTGCACGTTGGCTTTGTAGACGTTGGATCAGTACTGCCGCCCTACGTCATGCGTGACCTTTCCAACATGATGATCGCAGCGCAGAGCGGCGAGAGAGATGAGCATTAGCAGTTAAAAAGTATATAAATTTTCTTCACAATTTTTTTTTTTTTTTTTTTAGAAAATGACCGATC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU336834 True 317 lncRNA 0.40 2 1697963 1775915

Neighbor

gene id symbol gene type direction distance location
CI01000082_01680942_01689756 NA coding downstream 7942 1680791 ~ 1690021 (-)
CI01000082_01490700_01492559 NA coding downstream 205404 1490652 ~ 1492559 (-)
CI01000082_01372750_01454491 COL11A1 coding downstream 241443 1372398 ~ 1456520 (-)
CI01000082_01330784_01334768 OLFM3, OLFM3A coding downstream 362773 1330253 ~ 1335190 (-)
CI01000082_01300876_01305478 TECRL2A coding downstream 392485 1300567 ~ 1305478 (-)
CI01000082_01796282_01837217 VAV3 coding upstream 20321 1796236 ~ 1837547 (-)
CI01000082_01851564_01866686 NA coding upstream 75612 1851527 ~ 1867273 (-)
CI01000082_01885169_01923048 NA coding upstream 108406 1884321 ~ 1925600 (-)
CI01000082_01945468_01947837 NA coding upstream 167746 1943661 ~ 1947837 (-)
CI01000082_01976234_01986067 SYNC, NARS coding upstream 199896 1975811 ~ 1986067 (-)
G296673 NA non-coding downstream 22181 1675495 ~ 1675782 (-)
G295383 NA non-coding downstream 100187 1597562 ~ 1597776 (-)
G295334 NA non-coding downstream 202644 1494946 ~ 1495319 (-)
G295314 NA non-coding downstream 216541 1479891 ~ 1481422 (-)
G296729 NA non-coding upstream 100348 1876263 ~ 1876501 (-)
G296685 NA non-coding upstream 164819 1940734 ~ 1942205 (-)
G296740 NA non-coding upstream 196591 1972506 ~ 1972817 (-)
G296742 NA non-coding upstream 262461 2038376 ~ 2042238 (-)
CI01000082_00689066_00690051 NA other downstream 1007529 688512 ~ 690121 (-)
CI01000082_00678125_00678798 NA other downstream 1015657 677628 ~ 678839 (-)
G294821 NA other downstream 1026501 670484 ~ 671462 (-)
CI01000082_00666387_00667509 NA other downstream 1030123 665937 ~ 667840 (-)
CI01000082_00597462_00611609 ZMYND11 other downstream 1086338 596319 ~ 611625 (-)
G296906 NA other upstream 626904 2402819 ~ 2433912 (-)
CI01000082_02639529_02641582 NA other upstream 862356 2638271 ~ 2641851 (-)
CI01000082_02829738_02840354 NA other upstream 1061287 2829738 ~ 2840354 (-)
CI01000082_03329243_03330818 NA other upstream 1553219 3329134 ~ 3332093 (-)
CI01000082_04002837_04008950 BRAFLDRAFT_115150, CDK5 other upstream 2231077 4001099 ~ 4009112 (-)

Expression


Co-expression Network