Gene
RNA
| Item | Value |
|---|---|
| gene id | G296685 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000082 |
| NCBI id | null |
| chromosome length | 5120761 |
| location | 1940734 ~ 1942205 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU336830 | True | 1450 | lncRNA | 0.38 | 2 | 1940734 | 1942205 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000082_01885169_01923048 | NA | coding | downstream | 15134 | 1884321 ~ 1925600 (-) |
| CI01000082_01851564_01866686 | NA | coding | downstream | 73461 | 1851527 ~ 1867273 (-) |
| CI01000082_01796282_01837217 | VAV3 | coding | downstream | 103187 | 1796236 ~ 1837547 (-) |
| CI01000082_01680942_01689756 | NA | coding | downstream | 250713 | 1680791 ~ 1690021 (-) |
| CI01000082_01490700_01492559 | NA | coding | downstream | 448175 | 1490652 ~ 1492559 (-) |
| CI01000082_01945468_01947837 | NA | coding | upstream | 1456 | 1943661 ~ 1947837 (-) |
| CI01000082_01976234_01986067 | SYNC, NARS | coding | upstream | 33606 | 1975811 ~ 1986067 (-) |
| CI01000082_02065074_02095249 | PLPPR4, LPPR4 | coding | upstream | 122056 | 2064261 ~ 2095275 (-) |
| CI01000082_02172392_02173323 | NA | coding | upstream | 230173 | 2172378 ~ 2173582 (-) |
| CI01000082_02175270_02187098 | SNX7 | coding | upstream | 233022 | 2175227 ~ 2188166 (-) |
| G296729 | NA | non-coding | downstream | 64233 | 1876263 ~ 1876501 (-) |
| G296689 | NA | non-coding | downstream | 164819 | 1697963 ~ 1775915 (-) |
| G296673 | NA | non-coding | downstream | 264952 | 1675495 ~ 1675782 (-) |
| G295383 | NA | non-coding | downstream | 342958 | 1597562 ~ 1597776 (-) |
| G295334 | NA | non-coding | downstream | 445415 | 1494946 ~ 1495319 (-) |
| G296740 | NA | non-coding | upstream | 30301 | 1972506 ~ 1972817 (-) |
| G296742 | NA | non-coding | upstream | 96171 | 2038376 ~ 2042238 (-) |
| G296763 | NA | non-coding | upstream | 115521 | 2057726 ~ 2058135 (-) |
| G296773 | NA | non-coding | upstream | 151579 | 2093784 ~ 2094058 (-) |
| G296775 | NA | non-coding | upstream | 152517 | 2094722 ~ 2094953 (-) |
| CI01000082_00689066_00690051 | NA | other | downstream | 1250300 | 688512 ~ 690121 (-) |
| CI01000082_00678125_00678798 | NA | other | downstream | 1258428 | 677628 ~ 678839 (-) |
| G294821 | NA | other | downstream | 1269272 | 670484 ~ 671462 (-) |
| CI01000082_00666387_00667509 | NA | other | downstream | 1272894 | 665937 ~ 667840 (-) |
| CI01000082_00597462_00611609 | ZMYND11 | other | downstream | 1329109 | 596319 ~ 611625 (-) |
| G296906 | NA | other | upstream | 460614 | 2402819 ~ 2433912 (-) |
| CI01000082_02639529_02641582 | NA | other | upstream | 696066 | 2638271 ~ 2641851 (-) |
| CI01000082_02829738_02840354 | NA | other | upstream | 894997 | 2829738 ~ 2840354 (-) |
| CI01000082_03329243_03330818 | NA | other | upstream | 1386929 | 3329134 ~ 3332093 (-) |
| CI01000082_04002837_04008950 | BRAFLDRAFT_115150, CDK5 | other | upstream | 2064787 | 4001099 ~ 4009112 (-) |
