G297047


Basic Information

Item Value
gene id G297047
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 2814069 ~ 2815014 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU337221
TGTGACAATAGCTTTAATTAAAATACAATTAATATTATGTAATGCATTTCTCCCTGCACTAATTGCACACAATGGGCTGGTACAGACATTGTGATTAAATGTAAAACGAAAATGCATCTTATACTGATCGGAAAAGCTGATTATGTTTTCATATTGTTGTTGTTATTATTATTATTATTATTAGGCACATGACTGAACCACTGAGACCCATCTATGACTTTCATCTATACATGCAGATTGAGATCTGAGCACCATTTCTCAGTGTGTATAGTTTTAAGTGCATTCTGGTCAAACTTGACACGCAAGTTGCTACATGATCTTAATAAAATGAAATCAAACATAAAGGCACATTTTGTTTTGTATAGGAACTGTAACTTAATCATTCAGGCACATTAACATGATCAATTTAACATTATGCATAAGATATATGACAAAATGGCTTTGCAAAGCACTGATTAAAAATTCATATACAGATTAAAAAAACACATGATGTACAGAAAAGCGTTATGATAATGACATGAAAATATAAAGACTGTAAACAATTTTGTAAGGAGTAAGTGAGAATCATACTGTAAATGTCTTCATTTACAGTAAGATACTTAGATTTACAAACAAGATCCATAATAGACCATTTCAAGATCATTTGGCACATGAAAACATAAAAATAAAAAAATATTTATTTACAAGTTAACTAATTTAAAACAAAAAGCCTCTTTAAGAAAGCCTAGAGTTAGGTTAGCAGGTTGGTGATGTTCAGTTGTTGAGTTGTATGCAGTAAGAAAACAGGTCCTTCAGTTCTGTGTCGGCCCATTTGAAGCGTCCACTGGAGTGTTTGACTTCGGAGGTGTAAGCTTCATCATGTTAAAGAAGGTGACGACCTGACCAGGAACCTCCGCCAGAACACACTTAGCGAGCTCCTCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU337221 True 922 lncRNA 0.33 2 2814069 2815014

Neighbor

gene id symbol gene type direction distance location
CI01000082_02762419_02777589 ABCD3, ABCD3A coding downstream 35973 2761980 ~ 2778096 (-)
CI01000082_02750513_02759616 ACP5B coding downstream 52773 2750480 ~ 2761296 (-)
CI01000082_02716435_02737089 NA coding downstream 76596 2716065 ~ 2737473 (-)
CI01000082_02686245_02689228 CNN3B, CNN3A, CNN3 coding downstream 124841 2685376 ~ 2689228 (-)
CI01000082_02648283_02668024 TMEM56, TMEM56A coding downstream 146045 2646788 ~ 2668024 (-)
CI01000082_02819813_02826440 NA coding upstream 3766 2818780 ~ 2826440 (-)
CI01000082_02829738_02840354 NA coding upstream 14724 2829738 ~ 2840354 (-)
CI01000082_02927016_02952280 NA coding upstream 111558 2926572 ~ 2952666 (-)
CI01000082_02962536_02962848 MMP16 coding upstream 147474 2962488 ~ 2962848 (-)
CI01000082_03069619_03074440 STEAP2 coding upstream 253293 3068307 ~ 3074871 (-)
G297051 NA non-coding downstream 6265 2801293 ~ 2807804 (-)
G297043 NA non-coding downstream 52423 2761433 ~ 2761646 (-)
G296951 NA non-coding downstream 66139 2743616 ~ 2747930 (-)
G297017 NA non-coding downstream 168887 2644846 ~ 2645182 (-)
G296982 NA non-coding downstream 278998 2534850 ~ 2535071 (-)
G297055 NA non-coding upstream 9403 2824417 ~ 2824694 (-)
G297058 NA non-coding upstream 100562 2915576 ~ 2922022 (-)
G297100 NA non-coding upstream 183236 2998250 ~ 3003174 (-)
CI01000082_03136108_03172662 RSU1, RSU1.S non-coding upstream 357429 3135166 ~ 3172887 (-)
G297170 NA non-coding upstream 417699 3232713 ~ 3235633 (-)
CI01000082_02639529_02641582 NA other downstream 172218 2638271 ~ 2641851 (-)
G296906 NA other downstream 380157 2402819 ~ 2433912 (-)
CI01000082_00689066_00690051 NA other downstream 2123635 688512 ~ 690121 (-)
G294821 NA other downstream 2142607 670484 ~ 671462 (-)
CI01000082_00666387_00667509 NA other downstream 2146229 665937 ~ 667840 (-)
CI01000082_03329243_03330818 NA other upstream 514120 3329134 ~ 3332093 (-)
CI01000082_04002837_04008950 BRAFLDRAFT_115150, CDK5 other upstream 1191978 4001099 ~ 4009112 (-)
CI01000082_04332255_04333022 NA other upstream 1505496 4330173 ~ 4334359 (-)
CI01000082_04698358_04700580 NA other upstream 1883188 4697533 ~ 4700580 (-)

Expression


Co-expression Network