G297298


Basic Information

Item Value
gene id G297298
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 3468956 ~ 3470374 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU337499
CATTTAATTCACATACACAAACAAATGTCTCATTCATTGGTTTAATTTGTTCTCAAACTCGTGTTCTTGTTTTCTGCGATCATAAGCGAGCACAATAGGCCTAAATGACAAATTTTGCATAGGCTACACAGGAATTTAAGGAAAAGTTCACAAGCATTTATTCTGGTACACCAGAACAGAACATATCATTGCCAATGCAGGGCACTGCAAAGGAATTAACATTGATTGACTCTTTATCCAGCTCTGGTTTCTGAGGGACGGCGTCAATACCAGCTCAACCTCACTGTTTGTGGCTGATCTGACCTGTTTTGAAGAACTCTAGGAGGTTTTGCAGATAGCAACAGCAGCAGTGTGTGTGGAATTCTAAGTGTAATAAATTCACTTCCATTTTATGTAAAACAGCACCTGCAAAACTTATCATTTTGTGTTTGATGAATAACATGGGTTTGGAACATCATGAGGAAAAGGAAAAATGACTTCATTTGTTGCTGTCCAATAGAGTTGTCAAAAGTACCGACTGCTTTGAGCGCTGTTGAGCGGATTCGTAAACACCTGATTGGCCATTGTGTTCACGCGCTCATTGGATATGTCTGTGATTGGCTACAATGATCAACGCACGGGAGCGTTTGAAATCACACTGAAGTGTTTTGAATTTGAAAGCAGGCGTCTATCAGCGGACTGGTCCGCGATACACGCCTGCTTTCAAATGCTCTTGTGTGTATCTGTATAAGCGCTCGATGAAGAGCGTCATTGATGATTATTTACAATGTTTTTGAAGCGTTGATCATTGTAGCCAATCAGAGACATATCCTATGAGCACGTCAACACAGTGGTCAATCAGAGGTGTTTATGAATCCGCTCAACAGTGCTCAAAGTGTCACATTTTTAAAAATTTCAGTACAAAGTCGGTACTTTTTACAACTCTACAATGAAGTTCCCAAGTGTTTTAGTGCTGAGAACTACCAAAAAAAAAAAAAAAAAAACTTTGTTCTTTATGCTTCAGCAAACAAAGACAATATTCAAATCTAAAAATTTAGTGCACTATGAAAACTTGCTTATATATATATATATAAAACATTAAGCTTGGCTGTTGAGAGTGCATTTACAAAACCAGCCCGAGGAAGAAAAACTGATGGACTAGCATGTTTTTGCTATATGTCTTGTATGGTATATGGTTTAAAGTTTCTGTGATTAGTCCAGAGTCCATTTTCTGTATGTTAAAATGTTCTTCTAGAGTTGAGAGAAAAGCTGTGCCGCACCATCCACGTTGACGGCTTCCCGTGGAGCTTCTCTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU337499 True 1294 lncRNA 0.39 2 3468956 3470374

Neighbor

gene id symbol gene type direction distance location
CI01000082_03460478_03466764 NA coding downstream 2135 3460042 ~ 3466821 (-)
CI01000082_03431448_03433211 RDH12L, RDH12 coding downstream 35745 3431448 ~ 3433211 (-)
CI01000082_03420930_03425791 PTCHD3A coding downstream 43066 3420341 ~ 3425890 (-)
CI01000082_03399450_03399994 EIF1B, EIF1 coding downstream 68962 3399172 ~ 3399994 (-)
CI01000082_03340985_03351365 CCDC129 coding downstream 117591 3340679 ~ 3351365 (-)
CI01000082_03484403_03543322 RALYL coding upstream 14029 3484403 ~ 3543322 (-)
CI01000082_03665937_03666736 NA coding upstream 195481 3665855 ~ 3666736 (-)
CI01000082_03751828_03759981 NRBP2B, NRBP2 coding upstream 281454 3751828 ~ 3759981 (-)
CI01000082_03775919_03779615 NA coding upstream 305198 3775572 ~ 3779615 (-)
CI01000082_03783967_03785384 NA coding upstream 313593 3783967 ~ 3785384 (-)
G297243 NA non-coding downstream 161039 3304216 ~ 3307917 (-)
G297206 NA non-coding downstream 215235 3253373 ~ 3253721 (-)
G297170 NA non-coding downstream 233323 3232713 ~ 3235633 (-)
CI01000082_03136108_03172662 RSU1, RSU1.S non-coding downstream 296086 3135166 ~ 3172887 (-)
G297100 NA non-coding downstream 465782 2998250 ~ 3003174 (-)
G297315 NA non-coding upstream 76604 3546978 ~ 3547720 (-)
G297289 NA non-coding upstream 101547 3571921 ~ 3576845 (-)
G297286 NA non-coding upstream 122111 3592485 ~ 3618325 (-)
G297316 NA non-coding upstream 159944 3630318 ~ 3630859 (-)
G297317 NA non-coding upstream 163276 3633650 ~ 3633849 (-)
CI01000082_03329243_03330818 NA other downstream 138205 3329134 ~ 3332093 (-)
CI01000082_02829738_02840354 NA other downstream 629989 2829738 ~ 2840354 (-)
CI01000082_02639529_02641582 NA other downstream 827105 2638271 ~ 2641851 (-)
G296906 NA other downstream 1035044 2402819 ~ 2433912 (-)
CI01000082_00689066_00690051 NA other downstream 2778522 688512 ~ 690121 (-)
CI01000082_04002837_04008950 BRAFLDRAFT_115150, CDK5 other upstream 536618 4001099 ~ 4009112 (-)
CI01000082_04332255_04333022 NA other upstream 850136 4330173 ~ 4334359 (-)
CI01000082_04698358_04700580 NA other upstream 1227828 4697533 ~ 4700580 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G159548 NA non-coding NC_056722.1 CM032091.1 1627163 ~ 1627396 (+)