XLOC_010808 (phf20l1)


Basic Information

Item Value
gene id XLOC_010808
gene name phf20l1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 31601181 ~ 31622805 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021156
ACGTTCAGTTTGGTTAAAACTAACTGAGCTGGAATGAACACAATACACTATAGGAATTAATTGCTATTCTCTCAATGAATTTGCAAAGGTTTGTCCACAGGACGAGAGAGCGTTTGAGTCTCGAGAAAGACCTGGTTAGAGAATACTCAAAATGAGCAAAAAAACTCCAAATCGACCAGGGATCACGTTTGAGGTTGGTGCCAGGGTCGAGGCCCAGGATTATCTACAAAAATGGTACCCTTCACGCATTGAGAAGATTGATTATGATGAAGGAAAGATGCTTGTGCATTTTGACCGTTGGAGCCATAGGTATGATGAATGGATTCTGTGGGACAGCAACAGACTTCGACCCTTAGAGAGACCGGCACTCCGCAAAGAGGGTCTCAAAGAAGAGGAGGTGTCTGAGAGACTCAGCGAGATGAGAGCATCTCGCCTTCGTGAGCTTCCTGGAAGTACAGAGAGCACAGAAGACCAAAAAGACTTACCCCAGCAGAGACAAGAATTGAGAGACGGGGAGGAAGTGCTTGCACGATGGACAGATTGCCGCTACTACCCTGCAAAGATAGAAAGTATCAACAAGGAAGgaACTTACACTGTACAATTTTATGATGGTGTCATTCGCTGTGTGAAAAGAATCCATATCAAGTCCATGCCAGAAGATGCAAAAGGACAACAGGACTGGATCGCACTGGTGAAAGCTGCCTCTGCTGCGGCCAAGAATAAAGGAGGAAACAGACCACGTACCAGCGCCAACAGCAACAAGGACAGAGAGGATAGGAGAGAACAGCGGTCAGATGaagaggaggatgatgatgatgctgacgaggatgatgatgatgatgatgatgatgatggggaggaggaggaggaggaggaggacagtGAATCGGAGAAACTTGCAGATCTGGACTCAGAAGAAGAGGACAGTAAGCCACCTGCTGAGGAACTTGAATCGGCTATAGCAAAGAGGAGGAGCAAAAGACAAGGCAACCAGTGCAGCATTAAAAGGAGTCGCCTTGGCAAAGGAGCAGGGTGTGCTGACACTGAGACTGAATTGAAAGCAGAGACTAAAGAGCTTCCAGTGACACCACAGCAGAAAGTACCAAGTCCAGAGCCTAGTCCAGCTGATGAGAAGTCCCAGTCGGTCAGTGCCCAAAAGACAACCCCATCCCTCTCTAACCCACCTGCATGCAAAGCTCGTTCAAGAAGACTGAAACATGACTCTGGAGAGTCCGCATCCAGCTGTCAGAACACACCTGCAGCCCCCGAATCTAGTCCTTTACCCAGCCCAACACAAACCCTTCCAGACAGCACACACACTGCCCCTTCCAGCTCCCCCCAAAGAAGGAGACGATCTCAACGTCTAGCAACAACCTCTGACCTGATCTGTCCGCCGTCACCACACACAAGGGATACAGCTACTCATCCTACACCACCACCAGATGGACCTCTGATAGCTGATGAAGACAGCAGCACTGTGGTTAAAACAGAAGCTATTTCACAAAAGCCAGTTTCAGAAAGCCCATCCACAGCTACTTCCACTGCCAGTGCTCAGGCACCAATCACTGAGAAGGagaaaatgaatgatgttttGCCCAGTAATCAAGCAGCACTTGAAGGGAACTCACCTGCTGTAGTCCCAGctGCAATTCAGAAAGTTCCTTCTAGAACACCTAAAGCCAACAAACATGCCAGAGAACCAATCATAAACACCAAGAGGTCTGATGACCCCTTAGCTCCCAACGAGTGTATAATAGATCTGGACCATAATAAATTTAAGTGTAAAGTCTCTGGCTGCTCGAAAGCGTTCCGGAAAGCTAAGCTGTTGGACTATCACCTGAAGTACTATCACAACACTGAGAAAGAAATGGACACCGAGGTCTGCTCCCCAGAGAGGGAGGGCCGCACCAGGGCCACGTCTGCTTCCATGCCTACAAGCACATTATCAGATGTCCCCGATAACAAGAGGCGCAGGACCGTCTCTACTTCTTCCTCTCTGTCCTCTCAGGGCTTCATGCTTCAAATGGACAGTGGTGGCTGTGTGCGGCCTTCTAAGTTTTGTAAAAAGAAACGCTCGTCTGCCTCTATGAGTTCAGACAGTACAGAGGTCTCCCTTCCACCTCCCACCTTTGATAACCTCCACGACAAGATTATCAAGAAGGACAAGCACTTGGATGGTCTTTGTATAAAAACAGAGCGTAAATTTAAACTGGATGATAAATGTCAACTGTTTGTCAAAAAGAGGGATAAAGACCGGAGAGACAGAAAAGAAAAGGACCTTTTCCGAattaaacagaagaaaaagaaaaaaaagaagaagaaatcaaAACTGCATTGTTACCCAGACCTGGATGAGATGTCGTTGGCTTACTTGGAGAGACCGTCTTCCCCACCGCATCGTTCTTCCTCTAGTGCCTTCAAGCACAGCACCTTCCAATACCCTCGTGCCATACTATCTGTCGACCTCACCGGGGAGAACCTTTCAGACATCGACTTCCTGGAAGACTCGACCACTGAGAGCTTACTGTTCAGTGGAGATGAGTATAACCAGGATCTAGACTCAATCACTATGGAGGACTTTcaggatgaggatgatgatggtgCTGATGAAATTGTTCGCTGCATATGCGAGATGGATGAAGAAAATGGCTTCATGATTCAGTGTGAAGAATGTATGTGCTGGCAGCACAGTGTATGTATGGGGCTTTTGGAGGACAGCATCCCTGAACAGTACATCTGTTACATCTGTAGAGACCCTCCAGGTCAGAGGTGGAGCGCAAAGTACCGCCATGATAAAGACTGGCTTCAAAAAGGCCACATGTACGGCCTGTCTTTCCTCGCCGAGAACTACTCGCATCAGAATGCCAAGAAAATCGTGTCCACTCACCAGCTGCTGGCTGATGTTTACAGTGTTAAAAACCTGCTCCATGGCCTTCAGCTAAAGATGGATATTTTACAGAACAAGCATAACCCAAGTTTACACTTGTGGGCTCGGTCTTGGGTAAACTCTGATGAGGACCAGCCTATGGGTGGAGTTCCAGACGGTCTACATTTCAAAGAGCACCTTAATCAGAATTCAAACCCTGAAACCTACATTACTAGTGAGCACAGCTACCAAAAACCACCTGGGACTGGTGCCGAGCACACAAGAGATGAGCAGGGGATGCAAATGGGCTCTCAGTTTAACATAAAGGAAGAAGAGGTCAGCAGTGCCATTGCTCTGTCTGGATGTGTTAATGACAGCAGTGTGGAGCAGACCAGGAACTGCCTGCAGTGGCAGATGAACCTGCTCACACACATAGAGGACATTCAGAACCAGTTGTCGGGCCGCATGGACCTCATTGAGAAAGAGCTTGATGTGCTGGAGAGCTGGCTGGACTTCACTGGTGAATTGGAGCCTCCTGATCCTCTGGCCCGACTCCCTCAGCTCAAGTGCCGCATCAAACAGCTTCTGACTGACCTGGGAAAAGTGCAGCAGATGAGCACCCTCTGCTCTGTGTGATACATGCATTATAGTGTCTTTTCTAAGCTTCTAACAACAATCTGCGCACTCAAGGAGGTGTATTCTCTTCAGTGGTTGTGTGCTCCCCTTGAAGATGAACGCTGGCCATGACCAAGTCTGAGATTCATGCTGAATGTGTCAAACAGGAAGATGTCAGTGAGCCTAAACTGCATTTGTGCTTAAAGAGAATGTTGTTGTCCAAAATAGGAAAACATCACTATAGGATATTAATTCTTTCATGTGTTAACAGAAGGGAAcataatctatttttaaaaaagattacaACATCAAACATGGATTTAGGttttagcttgtttgtttgtttgtttgtgtttttgcatCAGTTAGACCCCAAAAGCAAATCCAGTCTGTTTTTTTCCTCTCTGTGAGCTTAAGGAAATATGAACTTGACTGTAGTGGGTCTTTAATAGCAGACCATTTAAAAGTTCATTagtgtttgatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaatatttaatgaaaaaggTTTTTGCCACTTAAAAAGTCACTTTGAAGTGCCAAGGAAACAGACCCATATGGTCCGTTTTTCTttatccagaaacgcacagttcAGAATTTCCAAGTTTTTGAAATTGAATGTTGGATTTTATTAAAGCAGGATAAGGCTAGTTTGCAGTCTGATACACTGGCACTAAAGGTTCGCAATGCCAACAAACTCATTAAAACAACATCTAGATAGATAAATAGTTTTCGTACAACAGCTCGTCTAATATTTTAGCATGTTTCTCTACAGTCTTGATGGATGCTGTAGCGATACACAAGAAAGCAAGCTAATCTAATGGTG
>TCONS_00021157
ATGAGCAAAAAAACTCCAAATCGACCAGGGATCACGTTTGAGGTTGGTGCCAGGGTCGAGGCCCAGGATTATCTACAAAAATGGTACCCTTCACGCATTGAGAAGATTGATTATGATGAAGGAAAGATGCTTGTGCATTTTGACCGTTGGAGCCATAGGTATGATGAATGGATTCTGTGGGACAGCAACAGACTTCGACCCTTAGAGAGACCGGCACTCCGCAAAGAGGGTCTCAAAGAAGAGGAGGTGTCTGAGAGACTCAGCGAGATGAGAGCATCTCGCCTTCGTGAGCTTCCTGGAAGTACAGAGAGCACAGAAGACCAAAAAGACTTACCCCAGCAGAGACAAGAATTGAGAGACGGGGAGGAAGTGCTTGCACGATGGACAGATTGCCGCTACTACCCTGCAAAGATAGAAAGTATCAACAAGGAAGgaACTTACACTGTACAATTTTATGATGGTGTCATTCGCTGTGTGAAAAGAATCCATATCAAGTCCATGCCAGAAGATGCAAAAGGACAAGACTGGATCGCACTGGTGAAAGCTGCCTCTGCTGCGGCCAAGAATAAAGGAGGAAACAGACCACGTACCAGCGCCAACAGCAACAAGGACAGAGAGGATAGGAGAGAACAGCGGTCAGATGaagaggaggatgatgatgatGACAGTAAGCCACCTGCTGAGGAACTTGAATCGGCTATAGCAAAGAGGAGGAGCAAAAGACAAGGCAACCAGTGCAGCATTAAAAGGAGTCGCCTTGGCAAAGGAGCAGGTAAACATTTGCAGAGAACTACCCAAAACAAGAAAGTACCAAGTCCAGAGCCTAGTCCAGCTGATGAGAAGTCCCAGTCGGTCAGTGCCCAAAAGACAACCCCATCCCTCTCTAACCCACCTGCATGCAAAGCTCGTTCAAGAAGACTGAAACATGACTCTGGAGAGTCCGCATCCAGCTGTCAGAACACACCTGCAGCCCCCGAATCTAGTCCTTTACCCAGCCCAACACAAACCCTTCCAGACAGCACACACACTGCCCCTTCCAGCTCCCCCCAAAGAAGGAGACGATCTCAACGTCTAGCAACAACCTCTGACCTGATCTGTCCGCCGTCACCACACACAAGGGATACAGCTACTCATCCTACACCACCACCAGATGGACCTCTGATAGCTGGTGAGAGACACTTGCATAGATACATAAATATCATAAACACCAAGAGGTCTGATGACCCCTTAGCTCCCAACGAGTGTATAATAGATCTGGACCATAATAAATTTAAGTGTAAAGTCTCTGGCTGCTCGAAAGCGTTCCGGAAAGCTAAGCTGTTGGACTATCACCTGAAGTACTATCACAACACTGAGAAAGAAATGGACACCGAGGTCTGCTCCCCAGAGAGGGAGGGCCGCACCAGGGCCACGTCTGCTTCCATGCCTACAAGCACATTATCAGATGTCCCCGATAACAAGAGGCGCAGGACCGTCTCTACTTCTTCCTCTCTGTCCTCTCAGGGCTTCATGCTTCAAATGGACAGTGGTGGCTGTGTGCGGCCTTCTAAGTTTTGTAAAAAGAAACGCTCGTCTGCCTCTATGAGTTCAGACAGTACAGAGGTCTCCCTTCCACCTCCCACCTTTGATAACCTCCACGACAAGATTATCAAGAAGGACAAGCACTTGGATGGAACCTGCAATTCTTTTTCTGCCATAGTCAAAAAGAGGGATAAAGACCGGAGAGACAGAAAAGAAAAGGACCTTTTCCGAattaaacagaagaaaaagaaaaaaaagaagaagaaatcaaAACTGCATTGTTACCCAGACCTGGATGAGATGTCGTTGGCTTACTTGGAGAGACCGTCTTCCCCACCGCATCGTTCTTCCTCTAGTGCCTTCAAGCACAGCACCTTCCAATACCCTCGTGCCATACTATCTGTCGACCTCACCGGGGAGAACCTTTCAGACATCGACTTCCTGGAAGACTCGACCACTGAGAGCTTACTGTTCAGTGGAGATGAGTATAACCAGGATCTAGACTCAATCACTATGGAGGACTTTcaggatgaggatgatgatggtgCTGATGAAATTGTTCGCTGCATATGCGAGATGGATGAAGAAAATGGCTTCATGATTCAGTGTGAAGAATGTATGTGCTGGCAGCACAGTGTATGTATGGGGCTTTTGGAGGACAGCATCCCTGAACAGTACATCTGTTACATCTGTAGAGACCCTCCAGGTCAGAGGTGGAGCGCAAAGTACCGCCATGATAAAGACTGGCTTCAAAAAGGCCACATGTACGGCCTGTCTTTCCTCGCCGAGAACTACTCGCATCAGAATGCCAAGAAAATCGTGTCCACTCACCAGCTGCTGGCTGATGTTTACAGTGTTAAAAACCTGCTCCATGGCCTTCAGCTAAAGATGGATATTTTACAGAACAAGCATAACCCAAGTTTACACTTGTGGGCTCGGTCTTGGGTAAACTCTGATGAGGACCAGCCTATGGGTGGAGTTCCAGACGGTCTACATTTCAAAGAGCACCTTAATCAGAATTCAAACCCTGAAACCTACATTACTAGTGAGCACAGCTACCAAAAACCACCTGGGACTGGTGCCGAGCACACAAGAGATGAGCAGGGGATGCAAATGGGCTCTCAGTTTAACATAAAGGAAGAAGAGGTCAGCAGTGCCATTGCTCTGTCTGGATGTGTTAATGACAGCAGTGTGGAGCAGACCAGGAACTGCCTGCAGTGGCAGATGAACCTGCTCACACACATAGAGGACATTCAGAACCAGTTGTCGGGCCGCATGGACCTCATTGAGAAAGAGCTTGATGTGCTGGAGAGCTGGCTGGACTTCACTGGTGAATTGGAGCCTCCTGATCCTCTGGCCCGACTCCCTCAGCTCAAGTGCCGCATCAAACAGCTTCTGACTGACCTGGGAAAAGTGCAGCAGATGAGCACCCTCTGCTCTGTGTGA
>TCONS_00021158
CTGGAATGAACACAATACACTATAGGAATTAATTGCTATTCTCTCAATGAATTTGCAAAGTTTTATCCCCTCGGAACGGTTTAGCTAGTCAGCTGGTACAGCATTAGCTGTTTGCTAGCTCTGCTGTGCTAACTGGACAATGAGAGGTTTGTCCACAGGACGAGAGAGCGTTTGAGTCTCGAGAAAGACCTGGTTAGAGAATACTCAAAATGAGCAAAAAAACTCCAAATCGACCAGGGATCACGTTTGAGGTTGGTGCCAGGGTCGAGGCCCAGGATTATCTACAAAAATGGTACCCTTCACGCATTGAGAAGATTGATTATGATGAAGGAAAGATGCTTGTGCATTTTGACCGTTGGAGCCATAGGTATGATGAATGGATTCTGTGGGACAGCAACAGACTTCGACCCTTAGAGAGACCGGCACTCCGCAAAGAGGGTCTCAAAGAAGAGGAGGTGTCTGAGAGACTCAGCGAGATGAGAGCATCTCGCCTTCGTGAGCTTCCTGGAAGTACAGAGAGCACAGAAGACCAAAAAGACTTACCCCAGCAGAGACAAGAATTGAGAGACGGGGAGGAAGTGCTTGCACGATGGACAGATTGCCGCTACTACCCTGCAAAGATAGAAAGTATCAACAAGGAAGgaACTTACACTGTACAATTTTATGATGGTGTCATTCGCTGTGTGAAAAGAATCCATATCAAGTCCATGCCAGAAGATGCAAAAGGACAACAGGACTGGATCGCACTGGTGAAAGCTGCCTCTGCTGCGGCCAAGAATAAAGGAGGAAACAGACCACGTACCAGCGCCAACAGCAACAAGGACAGAGAGGATAGGAG

Function

symbol description
phf20l1 Predicted to enable metal ion binding activity. Predicted to be involved in histone acetylation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of NSL complex. Is expressed in cloaca and proctodeum. Orthologous to human PHF20L1 (PHD finger protein 20 like 1).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016573 histone acetylation biological_process
GO:0044545 NSL complex cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5837 Predicted to enable metal ion binding activity. Predicted to be involved in histone acetylation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of NSL complex. Is expressed in cloaca and proctodeum. Orthologous to human PHF20L1 (PHD finger protein 20 like 1).

Ensembl:

ensembl_id ENSDARG00000017427

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021156 False 4381 mRNA 0.45 24 31601181 31622805
TCONS_00021157 False 2967 mRNA 0.49 19 31602060 31621719
TCONS_00021158 True 838 mRNA 0.47 8 31618260 31622777

Neighbor

gene id symbol gene type direction distance location
XLOC_010807 tg coding downstream 2410 31530762 ~ 31598771 (-)
XLOC_010806 ccn4b coding downstream 75891 31518873 ~ 31525290 (-)
XLOC_010805 CR855311.2 coding downstream 89474 31508827 ~ 31511707 (-)
XLOC_010804 ptp4a3b coding downstream 95379 31453980 ~ 31505802 (-)
XLOC_010803 zgc:194210 coding downstream 148674 31428488 ~ 31452507 (-)
XLOC_010809 CR855311.1 coding upstream 1170 31623975 ~ 31628687 (-)
XLOC_010810 CR855311.6 coding upstream 16305 31639110 ~ 31644545 (-)
XLOC_010811 CR855311.4 coding upstream 23585 31646390 ~ 31651183 (-)
XLOC_010812 wu:fd46c06 coding upstream 35391 31658196 ~ 31661536 (-)
XLOC_010813 c1r coding upstream 39451 31662256 ~ 31675736 (-)
XLOC_010626 CR392024.2 misc downstream 10706006 20895112 ~ 20895175 (-)
XLOC_010802 NA non-coding downstream 193495 31385083 ~ 31407686 (-)
XLOC_010800 NA non-coding downstream 356500 31243780 ~ 31244681 (-)
XLOC_010798 NA non-coding downstream 431799 31166986 ~ 31169382 (-)
XLOC_010791 BX005347.1 non-coding downstream 952677 30648387 ~ 30648504 (-)
XLOC_010817 NA non-coding upstream 137308 31760113 ~ 31761131 (-)
XLOC_010820 NA non-coding upstream 255880 31878685 ~ 31881623 (-)
XLOC_010821 NA non-coding upstream 259343 31882148 ~ 31892032 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00021712 phf20l1,LOC107724788,LOC107671837,LOC107704904,LOC107587800 coding CM030130.1 CM030130.1 26579325 ~ 26596350 (+)