G297289


Basic Information

Item Value
gene id G297289
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 3571921 ~ 3576845 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU337488
TATCTTTCTTTGTGTTCAGCAGAACAAAAAGAAAATCATACAGGTTTGGAACAACTTGAGGGTGAGTAAATGATGACAGAATTTTCTTTTTTGGGTGAACTATCCCTTTAAAACTTTCTTTTTAAATATATATGTGAATGTATTTAAAAAATCTAACCATCTTTTTTTAAAGCAAAAAAAAAAAAAAATAGTTTCTCTTATTGTAGTGGACTAACAACTGCATTTGCTTTGCTGTCCGCACTCTCTCTCATTTATGTGAGGTAATATTCTTTATAAAACTGCTCCAGAGAATCATTAATTACTGGAGGAAACCAATTCATATCTCACCCAGCCTGAATAATGAGGGACAGGGGAGTCTCATACTCACCAATAATAAATTCATAAATGATACCCTGTCTCACCCTTGTCCTGACCAAGGATACTGCGGCCTAATCATTCCACAACCACCGTCAGCAGCCGTTCTTCATCACTATTCCACCTCTAACTCTGTAATCAGCCCAAACACGATAATTGGTGCAGTCTTTTAGGACGAGTTGTTATTTCAGAGGAAAAAGGTGAGCTTTGGGAAAAGAGATGGGAGTAGAACTGACCAGACAAGAATAATATTGAGTGTGCACTTTCATATAGCTCAGGAGATTTAATAGAGTACTCATTGTTTTGTATCGGGTTGGATTCAATTTTTTTCTCCTAAAGGACAAAATAGACACAAATGAGACACTTTTTAACATAAAGCATAAAGGTCTGTTTAATGAAGTATGCAACTTGTAGAGAGCTATAAATGAGAGATGTTAAAATTAATGAGGATAATTGCATAACGCTGCTCATTTGATATCATTTCCCTGTTAAAAAAATCAGCATATGCTGGTTAGGTATGTTTTGAAGCATGGAAGCTGGTTTGACCTGGTTTAAACCGGTCCTTAGTTGGTCTTTAGCTGGTCATGAACTGGTTTAAGCTGGTCAAGTGCTGGTCCTAAGCAGCTAGCTCCAGCTCATGACCAACTAAGGACCAGCATAAACCAGCTCAAACCAGATACCATGCTTCAAAACATACCTAACTAGCATATGCTGTTTTTTTCAACACGGTTGATTTGATATTTCTCATTTTATGGATTTATTGAGAAATTTATTGAGTTTTGATTGCAGACTTGATGTTAAGTCTCCATTTGGCTCAACTTTCTATGAGGAAACAGTTTTTAAAGAGATTGAAGTGAGACTGCAACTTTTTGTGTTCAGTGTTTTTTTTTTTTTTTTTTTTCACATCAAAATTAAGAATGGAAAGCACAAAATGTCATTTTTACGTACAATCAAATGCTTGGTGCTCTTCCAGATTCACAGCTCCACATTATTCAATGGGATGTACTTACACTACTATTGTTGGCAGTGTTACTATTTGGAAGCTCATGAAACATGAAAGGGTCTTCAGATTTGGTTTCCATTCTTTGGTCAAATTCTTATGACAGCTCCTAAACTCAGTGTGTCCTGGCAGGGATCCTCCATTCAGTTTAACAATAGAAATGTGTGAGCTTTTTGGTCCAGACAGTGGGATTAAGCTGTGCATGTCTGAATGGGGCACAATGACAGCAGGTCTGTGTAAATATATTCTGGGCTACAGTATTTTAATCCTGTTGTGTGTGTTCGCGTGCTTGAGAGGAAACATTACACTCAGCACCAAGGCCATAAACATGCTTACGCAAGTATGCAAATGCAGAACGTTTAGCCAATGTATTGTAAACGTATAGTCCATAGTATATACTTATTGTAGAGTCTTGTGTTAATGTGGTGATAACAAACCTGACATAAAGTACTCAAGGGGGTGCTAGAGTTAACGTCAAATGTCATTAAGCCAAATGTGTTGTTTTTCAGGTAGCTACAGTATGATGGTTATGAACATGTTGACAGTTAAAGTAATAGTTCACCCAAAAATGAAGTACCCAAACCCATAAGAAGTTAATGAAATCTGAGAGGTTTCTGTCCCTCCATTGAAAGTCTATTCAACCAAAACTCTGAGGCTTCAAAAAATTCATAAAATGATCGTAAAAGAAATCCATAAGAATCGAGCGGTTTAATCCAAGTCTTCTGAAGAGACACGATCAATTTATATGATGAACAGATTTAATTTAGGCTTTTATTCATATATAAACGTTTATCAGCGAACAGAAACTCAACTATACTTGCTTGACAAGAGAGTGAACCTTTTTGGTTGTCATGTCAAGCAAACATTATTGAGCTTCCGTTTACCTAATTTGGATACTATATGCACAGCAAAATCACCAGAGTTAAATCAACTCTGCTTGGAGTACATATGGTCCCTCTCTAAATAGTGTTAAAGTAACACTTAACCAGAGTTAAAGTTAATGAGATAATTAAGAGATGATTGAGCGTTAGTGATGAACACCTGCTGTTAACAAGCAGAATCACTGAAGAAAAGAGAAACACAAGAACTATAACTGACTTCAGCCACAGTCTTAGATGAAATCAACTGAAGATATAATACAGTATATGTCTCAAGATCTCAGTAGAGAATGATTATCTTTTCTTCAGTGATTCTGTTTGTTAATAGCAGGTGTTCATCACTGATGCTCATTCATCACTTAATTAAACGCTTAATTATCTCATTAACTTTAACTGCTTCAGTGTTGCTTTAACACTATTTAGAGAGGGGCCATATGTACTCTGTGCAGAGTTGATTTAACTCTGGTGATTTTGCTGTGTGTATGTTCGCTGATTAGTGTATATATGTGAATAAAAACCTAAATTAATTCATAGTGAATTCAGTTGTATGTTCTGCAATACAGTTTTATATTTCCTTAAAGGTCTGTAAACTCCTTTATTCTTGAACTCTAGCATCTTACCCATAGTTTTGTTTGTAAACAGACAGAAAAAGACAAAAGAAACCCACAATACTCAGAGGAACAGAAATTGTCCACTTAAAGGTATGCTATGCTGTGTGTATCTTTGATCACTTTAATTATAAATGATCCTGGGGGTCTTCCTCTTTATCCTGACCTGATACAGCCCCCATAAATATTCTCTCTCAAGTGCTCCCATAATCCTCTTTGTCTCCTCCTTGCATCCATCTTTGTAACCCTCCAAACTTTAGATTCTAGTGTAGGTGTAACAACAGAGAACTGATGCAATATTTAGCATTTCTAAGGGTATACATTTACATGACAAAATGTACTAAAAATGTTTTTTCCTTTGCATTTTTCACGTACAGACGACAATGTTGTCAAAACGATCCCCGTTCACATGGATCCGTGAAAAACCTAAAAACGCTGTATTATGCTGCCAGACCAGTAGTTGGTAAAGAGACACTACGAGCCTATAGACTAAACACGTAACACGCATTCGCATGACGTCACCGTCTTTACAAATTTGTGTTTTTGTATTTTACATAGAGATGATAACGGTATCGTTTTCAAAAACTTTGAATACTGTTTTCAAAAGTTTGCGTTTTCAGGCCCCCAAAACGCCATTGTCATGTAAATGAAAGGCCAAAACGTATAAAAAGTTTTTAGTTGAAAATGCTGTCGTGTAAAAGGCCCCTTAGAATGGTGCTGTTTGCAGGCTTACAGGAAGTGGCCGATTTTGTTTTTGTCCTTAACTCCTGACATAATTTCTTGCAACTTCACATAAAATGAAATGCAGAGAAGGGAGATGTCCGTCAAATCGTGTGATTCAGACTCAAGTCAACAGCTTCTGTGACAGAAAACAAGCTATTTAAATGAGATCAAGAGTGCTCTGATGGCACCGTGGTAATTACATTACCCAGCTGCTAAACTACGGCTTCACTCACCACACTACGTCTAAACAAACATCATTAACCACAATCCCATCAAACAAGGATTTTGTATCTTTGACATCTCTCTTGTTGTTTTCACTGTTATACTTTAAGCCAGCTGTTTTTAGCAATATTTTATGCAGTTATTTTTAGCTGGTGTTTTCAGAAGCGAAGCATTTTGACCCTACTTGTCAAAACAGATGTTTCAGATGTTGTGTAGTAAACATTAGGAGCTGACTGGGGGATATATTTAACATTTACAATATACTTTATATTATTATTATTGACACTAAACAATTAATCAATATTGTGAAAGTGAAATGAGTTTAGAGGGAACATATCATGAAAATCTGACTTTTTCCATGTGTTATAATCTAAGTGCTATAATTGGGTCCCTGGTGCATCTACCAACCCAGAAAACGTGAAAAAGGACAACCCAGTAACTTTGTTTTGGTAAGCCTTTCTCTGCAAGCATGTGAAAAAACGAGCCGCTCAGATTTTGCTCCCCTAGTGACGTAGGAAGGGCATCTTATTATAATATTACCACCCCTTAATCTGCACGTTTCCACCCACGGCGCCGACATTTTGTTTTCACTAGTGAAAACGGTATACCAGTTCTAACACCCTGGCAAAAGTTCGAGCAAAGCATGCTGACTGTTCTGTCGTTGGCTGCACAGACGAGCACAGAACACTATTTAGAGTCTCATTAGCTTGGATAGCCTGCAAGTTCACCCTGGCAAGCTTGATTGCTAAAAAAGGAGCGTTTCTATCTGAGCGATATTTTGGAAAAAATATTGGACCGTTCACAGCATTTGATAGCAATCATAAACGTTAGCCTGGTGAGTATGGCTATGTTTGGCAAACAGGTACTCTATGTATAGTGGGCTTCCATATGGGTTTTGCGCAAAAGATTAACATGACGGCACATGCTAGTCGATGAGTTGAATCAACTCCACAGCAACTACATAAATTTATCCACTAACCATTCAGAAACATCCAGTTTCATTCTAAAAGTTGTAACTTCTTCCTGAGTCTTTCCATCAGTGTCAGACTCCGGTTTGAACAATGTAAGGCTGAACACCGTTACTGACAATTGTCATTTTGGCTGCGTGAGATTCTCCAGCTTTGTTGTTGTTGAGCAACC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU337488 True 4925 lncRNA 0.37 1 3571921 3576845

Neighbor

gene id symbol gene type direction distance location
CI01000082_03484403_03543322 RALYL coding downstream 28599 3484403 ~ 3543322 (-)
CI01000082_03460478_03466764 NA coding downstream 105100 3460042 ~ 3466821 (-)
CI01000082_03431448_03433211 RDH12L, RDH12 coding downstream 138710 3431448 ~ 3433211 (-)
CI01000082_03420930_03425791 PTCHD3A coding downstream 146031 3420341 ~ 3425890 (-)
CI01000082_03399450_03399994 EIF1B, EIF1 coding downstream 171927 3399172 ~ 3399994 (-)
CI01000082_03665937_03666736 NA coding upstream 89010 3665855 ~ 3666736 (-)
CI01000082_03751828_03759981 NRBP2B, NRBP2 coding upstream 174983 3751828 ~ 3759981 (-)
CI01000082_03775919_03779615 NA coding upstream 198727 3775572 ~ 3779615 (-)
CI01000082_03783967_03785384 NA coding upstream 207122 3783967 ~ 3785384 (-)
CI01000082_03787965_03790090 NA coding upstream 210795 3787640 ~ 3790090 (-)
G297315 NA non-coding downstream 24201 3546978 ~ 3547720 (-)
G297298 NA non-coding downstream 101547 3468956 ~ 3470374 (-)
G297243 NA non-coding downstream 264004 3304216 ~ 3307917 (-)
G297206 NA non-coding downstream 318200 3253373 ~ 3253721 (-)
G297170 NA non-coding downstream 336288 3232713 ~ 3235633 (-)
G297286 NA non-coding upstream 15640 3592485 ~ 3618325 (-)
G297316 NA non-coding upstream 53473 3630318 ~ 3630859 (-)
G297317 NA non-coding upstream 56805 3633650 ~ 3633849 (-)
G297318 NA non-coding upstream 57130 3633975 ~ 3634191 (-)
G297321 NA non-coding upstream 58912 3635757 ~ 3636031 (-)
CI01000082_03329243_03330818 NA other downstream 241170 3329134 ~ 3332093 (-)
CI01000082_02829738_02840354 NA other downstream 732954 2829738 ~ 2840354 (-)
CI01000082_02639529_02641582 NA other downstream 930070 2638271 ~ 2641851 (-)
G296906 NA other downstream 1138009 2402819 ~ 2433912 (-)
CI01000082_00689066_00690051 NA other downstream 2881487 688512 ~ 690121 (-)
CI01000082_04002837_04008950 BRAFLDRAFT_115150, CDK5 other upstream 430147 4001099 ~ 4009112 (-)
CI01000082_04332255_04333022 NA other upstream 743665 4330173 ~ 4334359 (-)
CI01000082_04698358_04700580 NA other upstream 1121357 4697533 ~ 4700580 (-)

Expression


Co-expression Network