Gene
RNA
| Item | Value |
|---|---|
| gene id | G297274 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000082 |
| NCBI id | null |
| chromosome length | 5120761 |
| location | 3738122 ~ 3745112 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU337473 | True | 1600 | lncRNA | 0.42 | 5 | 3738122 | 3745112 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000082_03665937_03666736 | NA | coding | downstream | 71386 | 3665855 ~ 3666736 (-) |
| CI01000082_03484403_03543322 | RALYL | coding | downstream | 194800 | 3484403 ~ 3543322 (-) |
| CI01000082_03460478_03466764 | NA | coding | downstream | 271301 | 3460042 ~ 3466821 (-) |
| CI01000082_03431448_03433211 | RDH12L, RDH12 | coding | downstream | 304911 | 3431448 ~ 3433211 (-) |
| CI01000082_03420930_03425791 | PTCHD3A | coding | downstream | 312232 | 3420341 ~ 3425890 (-) |
| CI01000082_03751828_03759981 | NRBP2B, NRBP2 | coding | upstream | 6716 | 3751828 ~ 3759981 (-) |
| CI01000082_03775919_03779615 | NA | coding | upstream | 30460 | 3775572 ~ 3779615 (-) |
| CI01000082_03783967_03785384 | NA | coding | upstream | 38855 | 3783967 ~ 3785384 (-) |
| CI01000082_03787965_03790090 | NA | coding | upstream | 42528 | 3787640 ~ 3790090 (-) |
| CI01000082_03793674_03817588 | SLC4A2B, SLC4A2 | coding | upstream | 48236 | 3793348 ~ 3817588 (-) |
| G297290 | NA | non-coding | downstream | 986 | 3735746 ~ 3737136 (-) |
| G297348 | NA | non-coding | downstream | 55368 | 3682548 ~ 3682754 (-) |
| G297347 | NA | non-coding | downstream | 56152 | 3681738 ~ 3681970 (-) |
| G297345 | NA | non-coding | downstream | 57826 | 3679857 ~ 3680296 (-) |
| G297323 | NA | non-coding | downstream | 90556 | 3647187 ~ 3647566 (-) |
| G297266 | NA | non-coding | upstream | 35041 | 3780153 ~ 3781606 (-) |
| G297376 | NA | non-coding | upstream | 130159 | 3875271 ~ 3878039 (-) |
| G297379 | NA | non-coding | upstream | 187755 | 3932867 ~ 3933335 (-) |
| G297380 | NA | non-coding | upstream | 189664 | 3934776 ~ 3935010 (-) |
| G297383 | NA | non-coding | upstream | 194907 | 3940019 ~ 3940328 (-) |
| CI01000082_03329243_03330818 | NA | other | downstream | 407371 | 3329134 ~ 3332093 (-) |
| CI01000082_02829738_02840354 | NA | other | downstream | 899155 | 2829738 ~ 2840354 (-) |
| CI01000082_02639529_02641582 | NA | other | downstream | 1096271 | 2638271 ~ 2641851 (-) |
| G296906 | NA | other | downstream | 1304210 | 2402819 ~ 2433912 (-) |
| CI01000082_00689066_00690051 | NA | other | downstream | 3047688 | 688512 ~ 690121 (-) |
| CI01000082_04002837_04008950 | BRAFLDRAFT_115150, CDK5 | other | upstream | 261880 | 4001099 ~ 4009112 (-) |
| CI01000082_04332255_04333022 | NA | other | upstream | 575398 | 4330173 ~ 4334359 (-) |
| CI01000082_04698358_04700580 | NA | other | upstream | 953090 | 4697533 ~ 4700580 (-) |
