G297376


Basic Information

Item Value
gene id G297376
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 3875271 ~ 3878039 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU337589
GTAAATATGCAAATAAAAACATTAACCCAGGGTTTAGGAATGTATAGTGTGAAACAGTAGCTTATGAACACCCAGGATTAATTGTTAGACCCGGGTAAATTACGAGCAATTTGAAACATGAAGCAAGATAACCAAGGATTTAGTTTACCTTGGGTTTAGAATGAATTTTAAGTGTGAAAAGCCCTAAAGTTACTGAGAAACCCTTTATACAGTTTACTTTGGGTACAACTGAAGTCAATCTGTTGTACTGTTGCCCTCTTGTGGTTCAAGTCTGCAGATGCAAAACTCATGCATGCTTGAAATTACCAGTAAACAACAAGGCATTAAACTCACCTTGAAAGCAAATGGCTGCAGCACGTTACCCTGTACGGTGGTGGAAAGGAGAAGAACGGCTGTTTCTGGACAATACATGTACCAGTTCACATTGATGCTCTGGCTCTTTAAGAGTTTCAGGGTTCGTTTATCAGGCAGCACCTGATAGAATTCTATTCCCTGGTCAGTGACGAATACAATCTCGTTCCAGTTGGTCCAACAAAACCCGAGAATACTGGCATTCTTTGTCTTGCACTCATGGGAGAATTCCAAGTGTGGATAGTCCGGAATAAAGTTTGTGAAATCAACTGATTTTGTAGTGCGCTGCACAGCTAAGATTTTGTTCCCCAATGAGAATTTGATACACTTCACCTCGCCTTTGTCATCCATTCTGAAAGCCACTGAGCTCTTGTCATCTGGTCCTTTAACCACAACACCTGTGGCCCCACCAGACCGTACAGCAAACACCTGTTTATTCGCCTCGTCAAAAAACACATTGTTGACGCTCGATGCGTTCTCAAACTGCACGGGGTTTTCACTGAGCTCTAGATAATATTCGTCACTCATATCGTTTAATAAAAAGTCCCTTATTCCGCAGTGTTGTGTTTTTATTTTAGCTAGTGTTTCCACTTCCGCGTCCGTCAAAAACGTGAGGCAGTCATGTGATGCGCAAGCGGTCATGTGACGTCACACCAGGCCTTCTGG
>TU337588
GTAAATATGCAAATAAAAACATTAACCCAGGGTTTAGGAATGTATAGTGTGAAACAGTAGCTTATGAACACCCAGGATTAATTGTTAGACCCGGGTAAATTACGAGCAATTTGAAACATGAAGCAAGATAACCAAGGATTTAGTTTACCTTGGGTTTAGAATGAATTTTAAGTGTGAAAAGCCCTAAAGTTACTGAGAAACCCTTTATACAGTTTACTTTGGGTACAACTGAAGTCAATCTGTTGTACTGTTGCCCTCTTGTGGTTCAAGTCTGCAGATGCAAAACTCATGCATGCTTGAAATTACCAGTAAACAACAAGGCATTAAACTCACCTTGAAAGCAAATGGCTGCAGCACGTTACCCTGTACGGTGGTGGAAAGGAGAAGAACGGCTGTTTCTGGACAATACATGTACCAGTTCACATTGATGCTCTGGCTCTTTAAGAGTTTCAGGGTTCGTTTATCAGGCAGCACCTGATAGAATTCTATTCCCTGGTCAGTGACGAATACAATCTCGTTCCAGTTGGTCCAACAAAACCCGAGAATACTGGCATTCTTTGTCTGAGGATAGTAAATGAAAACAGCAAAAAATATATATATTAACGTTCAAAATTTGTGGTTGGTTAAATTAAATGTTTTTGAAAAAAGTATTTAATGCATCAAATATACAGTGAAAACAGCAATATTGTGAAATATTATTACAATTTAAAATAACTTCTTTTAATATTTTTTAAAAAATGTTATTTTTACTTATGTAGTGCAAAGCTGAATTTTCAGCATCATTACTCCAGTCTTTAGTGTCACACGATCCTTCAGAAATCATTCTAATATGCTGATTTGCTGCTTAAGAAACATTTATGATTATTATCAATGTTTGTGGAAACCATGATACTTTTTTCAGGATTCTCTGACGTAAAATCAGCAAATAAAAACCACACTTGACTTGAAGGGTGTTAAAGGGTTAGTTCACCCAAAAATGAAATTTCTGTCATTAATTGTCGTTCCAAACCCGCAAGACCTTCGTTCATCTTCGGAACACATATTAAGATATTTTTGATGAAATCTGAGAGTTTTTTTTATCTCCCATAGAAAGCAATGAAATTACCACATTCAAGGTCCAGAAAAGTAGTAAAGACATTGTTAAATAGTCAACGTGACTACAGTGGTTCAACCTTAATGTTATGAAGCGACAAGAATACTTTTTGTGTGCAAAAACAAAACAAAAATAACGACTTTATTCAACAATTTCTTCTCTACCCTGTCAGTCTCCTATGCAGTTTACGTTGAAGACACATTGCAGGGACAGAAATCTATCAAATTTCATCAAAAATATCTTAATTTGTACTCAGAAGATGAACGAAGGTCTTACGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU337589 False 1017 lncRNA 0.42 6 3875271 3878039
TU337588 True 1372 lncRNA 0.34 2 3876568 3878039

Neighbor

gene id symbol gene type direction distance location
CI01000082_03855645_03863349 NA coding downstream 11922 3855433 ~ 3863349 (-)
CI01000082_03793674_03817588 SLC4A2B, SLC4A2 coding downstream 57683 3793348 ~ 3817588 (-)
CI01000082_03787965_03790090 NA coding downstream 85181 3787640 ~ 3790090 (-)
CI01000082_03783967_03785384 NA coding downstream 89887 3783967 ~ 3785384 (-)
CI01000082_03775919_03779615 NA coding downstream 95656 3775572 ~ 3779615 (-)
CI01000082_03890139_03903991 NA coding upstream 12100 3890139 ~ 3904047 (-)
CI01000082_03960633_03964447 MURCB coding upstream 81702 3959741 ~ 3964447 (-)
CI01000082_03966490_03976509 TMEFF1B coding upstream 87720 3965759 ~ 3976509 (-)
CI01000082_04002837_04008950 BRAFLDRAFT_115150, CDK5 coding upstream 124518 4001099 ~ 4009112 (-)
CI01000082_04009852_04017883 ABCB8 coding upstream 131676 4009715 ~ 4017955 (-)
G297266 NA non-coding downstream 93665 3780153 ~ 3781606 (-)
G297274 NA non-coding downstream 130159 3738122 ~ 3745112 (-)
G297290 NA non-coding downstream 138135 3735746 ~ 3737136 (-)
G297348 NA non-coding downstream 192517 3682548 ~ 3682754 (-)
G297347 NA non-coding downstream 193301 3681738 ~ 3681970 (-)
G297379 NA non-coding upstream 54828 3932867 ~ 3933335 (-)
G297380 NA non-coding upstream 56737 3934776 ~ 3935010 (-)
G297383 NA non-coding upstream 61980 3940019 ~ 3940328 (-)
G297384 NA non-coding upstream 62951 3940990 ~ 3941214 (-)
G297385 NA non-coding upstream 64154 3942193 ~ 3942512 (-)
CI01000082_03329243_03330818 NA other downstream 544520 3329134 ~ 3332093 (-)
CI01000082_02829738_02840354 NA other downstream 1036304 2829738 ~ 2840354 (-)
CI01000082_02639529_02641582 NA other downstream 1233420 2638271 ~ 2641851 (-)
G296906 NA other downstream 1441359 2402819 ~ 2433912 (-)
CI01000082_00689066_00690051 NA other downstream 3184837 688512 ~ 690121 (-)
CI01000082_04332255_04333022 NA other upstream 442471 4330173 ~ 4334359 (-)
CI01000082_04698358_04700580 NA other upstream 820163 4697533 ~ 4700580 (-)

Expression


Co-expression Network