G297387


Basic Information

Item Value
gene id G297387
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000082
NCBI id null
chromosome length 5120761
location 3944815 ~ 3945483 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU337600
ACCTGTGTTCATTCGCTCTGCAAGCATCCCAACATATTCAATTTTTTCTGAGTAAATCATCTGGTATCCCTTAATGAATGCCAAGTAGGATTTGGGAGTCACATAGGTTTGACGCCTGAAGCGCTGGAAGTACTCTGTGCAGATCTCAGCCACCATGTCTTGGAACATTCCCATTGTTTCTACCACGCTCTTCTTCACCTCGTCTGAACAACGCAGTGAATAGTTAGCGAGAAAGTGCTGAGCCACGGCTACTAAAGCATCGCGTGGCCACCGCTGGAACCAGTCAACAGTGCAGCCTGAGATGAGGCCAGGGAATTTCAGGGCACGGGAACGCAGTTTCTCGCCAACTGGTGAGAAGCAAAGAGCCACATGGAGGTTACTGCGCACCCTGGACAGGAAGTAGTTGTAGAGGTTGTCGATGGTGGGTGGGCAACGTGGGAGATCCTTCTTCATGACGGGAATAAGACTTTGGGTGATCTCATCTACCTCATCTCGAGGAAACAGGTTTGAGACTTCTCCAGATGCCAGAACGTTGTTCATGTACTCCAGAAAAGCTTCATCCTTGATGTCATTGTCTGTGAAGATGAAGGTCACGCCCTTCCCTTCCAAACCTGCAATTCTGTACAGGGCTTTCAGGTCCTCAATTAGATTACTCACATTGTATGTTCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU337600 True 669 lncRNA 0.48 1 3944815 3945483

Neighbor

gene id symbol gene type direction distance location
CI01000082_03890139_03903991 NA coding downstream 40768 3890139 ~ 3904047 (-)
CI01000082_03855645_03863349 NA coding downstream 81466 3855433 ~ 3863349 (-)
CI01000082_03793674_03817588 SLC4A2B, SLC4A2 coding downstream 127227 3793348 ~ 3817588 (-)
CI01000082_03787965_03790090 NA coding downstream 154725 3787640 ~ 3790090 (-)
CI01000082_03783967_03785384 NA coding downstream 159431 3783967 ~ 3785384 (-)
CI01000082_03960633_03964447 MURCB coding upstream 14258 3959741 ~ 3964447 (-)
CI01000082_03966490_03976509 TMEFF1B coding upstream 20276 3965759 ~ 3976509 (-)
CI01000082_04002837_04008950 BRAFLDRAFT_115150, CDK5 coding upstream 57074 4001099 ~ 4009112 (-)
CI01000082_04009852_04017883 ABCB8 coding upstream 64232 4009715 ~ 4017955 (-)
CI01000082_04046715_04059602 ASIC1C, ASIC3, SCNN1A coding upstream 100942 4046425 ~ 4061254 (-)
G297386 NA non-coding downstream 1011 3943574 ~ 3943804 (-)
G297385 NA non-coding downstream 2303 3942193 ~ 3942512 (-)
G297384 NA non-coding downstream 3601 3940990 ~ 3941214 (-)
G297383 NA non-coding downstream 4487 3940019 ~ 3940328 (-)
G297380 NA non-coding downstream 9805 3934776 ~ 3935010 (-)
G297388 NA non-coding upstream 2944 3948427 ~ 3949799 (-)
CI01000082_04166987_04239812 AGAP3 non-coding upstream 224001 4166065 ~ 4239812 (-)
G297445 NA non-coding upstream 257034 4202517 ~ 4203052 (-)
G297438 NA non-coding upstream 301920 4247403 ~ 4250253 (-)
CI01000082_03329243_03330818 NA other downstream 614064 3329134 ~ 3332093 (-)
CI01000082_02829738_02840354 NA other downstream 1105848 2829738 ~ 2840354 (-)
CI01000082_02639529_02641582 NA other downstream 1302964 2638271 ~ 2641851 (-)
G296906 NA other downstream 1510903 2402819 ~ 2433912 (-)
CI01000082_00689066_00690051 NA other downstream 3254381 688512 ~ 690121 (-)
CI01000082_04332255_04333022 NA other upstream 375027 4330173 ~ 4334359 (-)
CI01000082_04698358_04700580 NA other upstream 752719 4697533 ~ 4700580 (-)

Expression


Co-expression Network