XLOC_010815 (rbp5)


Basic Information

Item Value
gene id XLOC_010815
gene name rbp5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 31706841 ~ 31718013 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021168
CTCCTCTAAAGCCTGAGGAGCGCATTCCCAAACTGGGGGCTCGGGAGGCTGGATTTGGCTCGGTCCAGATTAAGTGATCTTCTCTGGGAGGAGTCACCGCTGCTTTTTGCTTTACTTACGGAGGGCAAACCGGAGACCATTCGTGAAGCTCATTGTGCAGCCGAACATCACGGAGTAAACTCTCGGAAACACCAAGCCGCGGATTCTGCTCTACACACCTAGCGTGCTGCTTGTAGGAAACGGCTTCAATCGCGCGATAATTTAACCAAATTAACCATCATACAATGAGATAGAGCTGCCTGGAGACACGGATAGAGATCAGACAGATACCCAGAGGAACAGTGAGCACACTAAGCCCTATATCACACAAAGTTTAGCTGCATTCGTGTCGATTCGAAACAAAAGGAaaatagaaagaaagagaaaatgtccaAACCTAATTACACTGGCGTTTACAACATGATTTCCCAGGATAATTTTGAAGAATATCTGGCGGCTTTGGATGTTAATTATGCACTGAGGAAGGTAGTCTGTATTCTGAAACCCAGCAAACACATTGAACACGATGTGAACACTGACAGGATGAAGATAAAGACCGTCACCACTTTTAAGAACTTCGACATGGACTTCACTTTAGGACAGGAGTTCACTGAGGACCTGGGGCCAGTCGATGGGCGAAAGTGCCAAACTACGGTGGACTGGGACGGTGATAAATTGATCTGCGTGCAGCGAGGAGAGAAAGAGGGCAGAGGCTGGACACACTGGTTAGAAGGAAACATCCTCCATTTGGAGCTGAGGGCTCAGGGTGTCACTGCCAAACAAGTCTTTAAGAAGGTTGAGTGaggatgaagagagagagagagaatcagaGGGGCCATTGCTGGGGGGGTTTGAGCTGAGTTTATTTCTTTGAGCCCATGGCTCAGAAAAAGGCTGGATTGCCACAGTTTTTTTTGTCCCTGATTCAAAACAAATCgtatttaaatgaaatgtttcagTTTTTTACCCCCGGAGTTGTGATTGAACTAAAACAATAGCACGACAGCAGCACCCTGTGTGAACATCCATCAATGGTACTATTGTAAAATGTGTATCTGAAAAATGGCACCTGAAAATTGTTTTCTGCAGATATGTTTACATAAGTTGAAGTCATTGAAACAGACAGTGGTTGTTCAATCCAAAGTTGTATTTAATGTCTAGTAATCTGCTACTGGATTTGTGCAAATGTTATGAAATAATCAAGTCGTGATTAATTTGCAGTTGTCAAACATTGTCTGAAAGTGTCAAAATTTGTAAGCTCTGAAAAGAATGACATGTCATTTTATTTGTCAACTCTAAAATACAAACGTTTATATTCATCCTGTTGTCtgaatgcttttcttacttattcttttttttatttctgacttaaGGAATACCAATAGCAACAAAATAACACGCATACAACTGCATtcaaaaactacttatttaaaatgagctgaaacaactcaaGGGTTGTGTTTTTTGATGGACAACTTTTTTATGAAAAATTTTATGTCcagtccacctaaatttgtaaaaatcgattgtgtggaacgcCATGTTTTTACAGCTTGtttgactcttttttttaaatattatttgtatgtTGTAAGGATGCATtacattgatcaaaagtgaccTTAAAGACATGTTAAGacatttgttaataaaatttaaacaacCACACATCCACACCATTTGAGGTGCAGGTAAGAATACATCAAAATTATGTGAGGAGGATAACACTTCTCTGCAAGCGAGTGTGCAGacattgttacatttttgcttcaaataaatgctgatttttttatttattaaacaatcaTGAATAATAATTGTATCTGCTATAACATATTTCAACATTAATAGTAAAAAGAAATGTTTCTTTagcaacaaataaatatattggaAGGATTTCTGAagtatcatgtgacactgaaaacgACCATCACATTGATTTGCTATCacatgaataaatgacattttataatgtagctgcaagcagcaatgatGGAACCAAGCATTTATTCCTTCTAGTTGCCTATTTGTTAGTCACCAAAcacaataatgattattatttttatttatttatcttgtttttttgtttttgttttttttgtcgatATCTGATGTTTTGCTGAATGCCACTAAATCATCTTTTGTTGCACTTTCGGAAAGTCTCTTATAATATAGTTAAGTTATAATTATAATCTCTACTATTATATATCTCTACTATTCTTAAATGACAGGAAGAATGTAATAGGACTTCCTCCTAGGTTCTggcaattttaaataataaaaaacattagaTTGACAAACAgttgttttagaaaatatctgTGCAACAATAAGATTTGTTAGGTTAAGTTGTTTCAgctcaaggctgcatttatttgatcaaaaggaGCTAGAAAACAACTTGGTAGTAGTAATGATCACCAGGGATTTAGGCTTTGCAGATTGCTGAAAAAACATGCATTACCACCCGGATTACAATTCTTCACCTttgattacacacatacacacagctgggagctgctcaagaCGTGATCAATCAGACTATATAAACTGCTTAGTTTGACactcacattgctgagtcttgtttggttTACACCCTGTAACTATTTTCCTGTGTCTAGTCTATCCAtgtttgacccttgccttgttttattgtttattctgcCTGCTGGCTGTTTTTGATCATTTGCCTGTTACCTGACAACGCTTTAATAATTCTCTACATGCATCTGTTTGTCCTTGTtctgaccgttgcttgcctgccTTTTGTTCTTAAACTGCACATGTATCTGTTGTCTAGCACCCTTATGTTACAGTAGTATTGtgaaatgtttaaatttaaaataactttaagaaCGAATTTAAAAATGTCTATTCTCAAGTATCATTACTCCAGGCTTCAGTGGTCTTTCAGAAATCGTCTAATCATTCCTTCTCTATTGTCAACTATTTGTACTGGTTCTCAGTCAATGGTTCTTATTTACCCAATGAGGTCCTTTGACCATGCTTAACATGACCCTGCATGTGAACTTCTGCAAGGAATGAATGACCTCAGATTCAAAGTGTCTGCTAATTTTTGATGTTAAGACCTCTAAAGCACCTAAGATTGTCATGAAAAAAATCTCAGAAGAACAATAGGGCCCATTGTGCATTTGGCTCGGGCCCTATGAAACAGGTATTCCAATAAGATCCTTGCACATGTCAactttcccagcactgggttgcagcatggaagggcatccgctgtgtaaaacatatgctggataagttggcggttcattccgctgatgaacaaagggactaagcttgaCTTGAATCTAAACTAaggcttttttattattagaaaatcatatctatatacagtatatgaaaaacTCTTGAATATTCAAAGGGAAAATTCACTCAAAAtgttaaattctgtcatcatttactcccatGACATGTTCCAGTTTACTTTTGAgtactttttattgttttctattgaacacaagaTGAAATTATCGGAAAATTATCGTTTTCCCAAAGGCTAACAGGTGCTGTAACGTTGTCTTAAttgatacacaaacacacataaatctgttaaaatctcaaaaaagtactcgaggtTTATTGAACATAAACTGAATAAAGCTGTAAACGTGCAATAGCAATGCATTTTCCTCACTTACCACCGAGGGGCGGCAATGGACTACTAACAGTAAACTACTGGGGCGTAATAATAAGTAAAGCGCTGTATCAACGGTAGAGGACAAGCTGACTGCATCTTCCACGTTTTACTTCCTTGTCGAGTTTGACTGGCCGCGAATATTACGTTGAGCAAAGAAAAGCTTGCGTCTGCAGTCAACTTCCG

Function

symbol description
rbp5 Predicted to enable retinal binding activity. Is expressed in several structures, including axis; digestive system; gonad; immature eye; and nervous system. Orthologous to human RBP5 (retinol binding protein 5).

GO:

id name namespace
GO:0008289 lipid binding molecular_function
GO:0016918 retinal binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-020320-1 Predicted to enable retinal binding activity. Is expressed in several structures, including axis; digestive system; gonad; immature eye; and nervous system. Orthologous to human RBP5 (retinol binding protein 5).

Ensembl:

ensembl_id ENSDARG00000101481

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021168 True 3889 mRNA 0.37 4 31706841 31718013

Neighbor

gene id symbol gene type direction distance location
XLOC_010814 c1s coding downstream 20239 31676281 ~ 31686602 (-)
XLOC_010813 c1r coding downstream 31105 31662256 ~ 31675736 (-)
XLOC_010812 wu:fd46c06 coding downstream 45305 31658196 ~ 31661536 (-)
XLOC_010811 CR855311.4 coding downstream 55658 31646390 ~ 31651183 (-)
XLOC_010810 CR855311.6 coding downstream 62296 31639110 ~ 31644545 (-)
XLOC_010816 ptpn6 coding upstream 2029 31720042 ~ 31756963 (-)
XLOC_010817 NA coding upstream 42100 31760113 ~ 31761131 (-)
XLOC_010818 chd4b coding upstream 43812 31761825 ~ 31791165 (-)
XLOC_010819 cdc42l coding upstream 97231 31815244 ~ 31824525 (-)
XLOC_010820 NA coding upstream 160672 31878685 ~ 31881623 (-)
XLOC_010626 CR392024.2 misc downstream 10811666 20895112 ~ 20895175 (-)
XLOC_010809 CR855311.1 non-coding downstream 78154 31623975 ~ 31628687 (-)
XLOC_010805 CR855311.2 non-coding downstream 195134 31508827 ~ 31511707 (-)
XLOC_010802 NA non-coding downstream 299155 31385083 ~ 31407686 (-)
XLOC_010800 NA non-coding downstream 462160 31243780 ~ 31244681 (-)
XLOC_010821 NA non-coding upstream 164135 31882148 ~ 31892032 (-)
XLOC_010828 CR854927.1 non-coding upstream 310066 32028079 ~ 32039063 (-)
XLOC_010829 NA non-coding upstream 325376 32043389 ~ 32049993 (-)

Expression


Co-expression Network