CI01000086_01005334_01006342


Basic Information

Item Value
gene id CI01000086_01005334_01006342
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 1004584 ~ 1006342 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000086_01005334_01006342.mRNA
AGCGTTCGTGGCATCTACAGTGACCATGGAGTGGACGGTGGGTCTCAGTAACCTGGTGTTAGCGGTCTACGGATTCACGCTGATCATAGGCCTTCCCGCCAACATCTTGGCTTTTTACACTTTCTTCCAGAAGGTCCGCCAGCGCTCCACCCCGATGGACGTGCTGTTACTCAGTTTAACCATCTCCGACTTAATCTTCCTCTTTTTCCTGCCATTTCGCATGGTGGAGGCAGCAAACATGAAATGGACAATGCCGTACTTCCTCTGCCCGCTGTCAGGATTAATCTTCTTCTCCACCATCTACAACAGCACCTTCCTCTTGACGGCCATCAGTGTGGAGCGATACTTGGGTGTAGCTTTCCCCATTAAATACAAGCTGAAACGCAAGCCTCGAAATGCCGTGATAGCCAGTGTCATTTTCTGGGTGGTTTCCATGGCGCACTGCAGCATCGTCTACATCATGCAATACCTCGACTATCTCAACCCCAACATCACCGATCCATCGAAGCGTGACACCTGTTATGAAGAATTCAGTGATGAACAGCTCAAGATCCTCCTGCCGGTTCGCCTCGAGCTGTCTATTGTTTTCTTCTGCATTCCTTTCCTCATCTGCTGCTTCTGCTACATCAAGTGCATCTGCATACTTTCCCGTCTATCCAAAGTTGACGCCAAGAAGCGGTATAGAGCTATCGGGATGGCGTTGGGAACGCTTCTGGTCTTTGTTATCTGTTTCATGCCCTTCAGCATCACACATGTGGAGGGATATTTTGGCGGCTACAGCGCTAAATGGAGAAGATATGCTCTGCTCACCAGCACGCTGAATGCATGTCTCGACCCTTTCATATTCTACTTCTCTTCTTCAGCACTCAGAGAGAATTTCAAGAAGGTGTTGCAGGAGCTGGTGGGGTGGCTGCTCCCTCTCTGCTGCCGCTCGGCTCTCTGCTGCTCTTTATTCAACCGTGGGAAATCAGAGGAGAGAACACAGAGCTCTGATGACAACATCCGCTAACATATCAAGCCAGGTTTTGCATTGATTGATGTGCTTTGTGTTGCCTGCATATGTCTTTAATGCATGCCATTCTGTCCAAAGCCAATTAATATAATTCTATTACGTCACCGTGACCCAATGCTTTATGGATAGACAGAAGAGGAGCGGCTTAAAAATGGTTTATGGAAGAAAATCAAGCAAGCATTAACATGCTGATTGCACTTATATTTTACTTAAAGGGTTAGTTCACCCAAAAATGAAAATTCTGTCATTAATTATTCACCCTCATGTCATTCCAAATGGGTTCTACATCAGAACGTCAGAATCACATGCATGCGCCGTACTGCTCACGTGAACAGAATCTGCCAAAATTCAGATGTAGAACCCGGAAGTGCTGCACTGTGATTACTACGTGAACAGAATAGGAGACATGACATGTAAGAGAAGAAATTGTTGAATAAAGTCTTTTTAATGTGTTTGCTTTTTGCACACAAAAAATATTCTCGTCGCTTCATAAGATTAAGGTTGAACCACTGCATACTATTTTAACGATGTCTTTACTACCATTCTGGGCCTTGAAAGCGGTAATAACGTTGCAGTCTATCAGAGGTCAGAAAGCTCTCAGATGTCATCATCTTAATTTGTGTTCCAAAGATGAACGAAGGTCTTACAGGTTTGGAGGGTGAGTAATTAATGACAGAATTTTCATTTTTGGATGAACTAACCCTTTAAATCTACGCAGCAGTGCAATTTTATTCACAATGAAATAAA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000086_01005334_01006342.mRNA True 1759 mRNA 0.45 1 1004584 1006342

Neighbor

gene id symbol gene type direction distance location
CI01000086_00978789_00999074 NA coding downstream 4844 978540 ~ 999740 (-)
CI01000086_00949574_00963179 NA coding downstream 41324 948026 ~ 963260 (-)
CI01000086_00935341_00936321 NA coding downstream 65396 935052 ~ 939188 (-)
CI01000086_00587995_00596565 BRAFLDRAFT_115002, ETFB, ETFB.L coding downstream 407845 587765 ~ 596739 (-)
CI01000086_00582697_00586449 VSIG10L coding downstream 418135 582697 ~ 586449 (-)
CI01000086_01069219_01094068 AGO3, EIF2C3, I2C3 coding upstream 62665 1061523 ~ 1094251 (-)
CI01000086_01101333_01138683 NA coding upstream 94418 1100760 ~ 1138683 (-)
CI01000086_01193934_01219331 NA coding upstream 187373 1193715 ~ 1219440 (-)
CI01000086_01237966_01253245 NA coding upstream 231569 1237911 ~ 1253288 (-)
CI01000086_01257926_01260025 SERPINB1L4, SERPINB14 coding upstream 251584 1257926 ~ 1260025 (-)
G299266 NA non-coding downstream 1965 1002265 ~ 1002619 (-)
G299221 NA non-coding downstream 128416 853604 ~ 876168 (-)
G299218 NA non-coding downstream 160405 843740 ~ 844179 (-)
G299096 NA non-coding downstream 278191 694096 ~ 726393 (-)
G299049 NA non-coding downstream 372258 629721 ~ 632326 (-)
G299119 NA non-coding upstream 29694 1036036 ~ 1044620 (-)
G299128 NA non-coding upstream 52662 1059004 ~ 1060093 (-)
G299283 NA non-coding upstream 171475 1177817 ~ 1237208 (-)
G299299 NA non-coding upstream 222579 1228921 ~ 1231136 (-)
G299173 NA other downstream 236705 765617 ~ 767879 (-)
G298872 NA other downstream 468274 535023 ~ 536310 (-)
G299107 NA other upstream 69804 1126738 ~ 1126798 (-)
G299528 NA other upstream 661864 1668206 ~ 1695177 (-)
CI01000086_01852638_01897719 UBR5 other upstream 887572 1852146 ~ 1897719 (-)
CI01000086_02366362_02373059 SLC6A20 other upstream 1357989 2364331 ~ 2373059 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011075 CU855821.1 coding NC_007127.7 CM002900.2 50917913 ~ 50918908 (-)